Carubv10001858m.g (Capsella rubella)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Carubv10001858m.g T334414_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.422 0.522
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001858m Sox 117 185

Links

Other Sox family TFs
Other Capsella rubella TFs

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.741
Bra026498 Brassica rapa Bra026498 I 0.731
Bo9g014140 Brassica oleracea Bo9g014140 I 0.730
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.714
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.641
Cla009222 Citrullus lanatus Cla009222 I 0.630
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.630
Bo2g160920 Brassica oleracea Bo2g160920 I 0.625
Bra029371 Brassica rapa Bra029371 I 0.625
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.600
HMGB7 Arabidopsis thaliana AT5G23420 N 0.594
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.594
MDP0000205665 Malus domestica MDP0000205665 I 0.592
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.589
Pm006054 Prunus mume Pm006054 I 0.589
TCM_007659 Theobroma cacao TCM_007659 I 0.583
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.580
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.574
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.562
30131.m007272 Ricinus communis 30131.m007272 I 0.556
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.552
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.552
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.550
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.546
mgf009124m Mimulus guttatus mgf009124m N 0.545
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.539
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.539
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.510
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.510
OBART08G00070 Oryza barthii OBART08G00070 I 0.510
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.510
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.510
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.510
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.510
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.510
OS08G0101100 Oryza sativa OS08G0101100 I 0.510
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.508
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.502
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.502
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.502
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.498
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.495
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.495
OB08G10120 Oryza brachyantha OB08G10120 N 0.491
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.488
Bra009681 Brassica rapa Bra009681 N 0.486
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.483
Ca_05351 Cicer arietinum Ca_05351 I 0.482
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.474
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.474
PK03866.1 Cannabis sativa PK03866.1 I 0.473
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.470
AAEL011425 Aedes aegypti AAEL011425 I 0.467
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.466
Si014434m.g Setaria italica Si014434m.g N 0.463
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.462
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.462
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.457
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.457
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.453
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.453
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.452
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.444
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.440
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.433
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.433
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.433
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.433
L798_13679 Zootermopsis nevadensis L798_13679 N 0.431
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.431
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.431
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.430
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.429
Cla018386 Citrullus lanatus Cla018386 I 0.429
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.428
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.428
OSTLU_15773 Ostreococcus lucimarinus OSTLU_15773 N 0.424
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.422
HMEL015307 Heliconius melpomene HMEL015307 N 0.422
HMG-1 Pisum sativum Q41026_PEA D 0.422
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.422
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.421
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.420
AMTR_s00046p00227790 Amborella trichopoda AMTR_s00046p00227790 N 0.419
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.419
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.419
29600.m000548 Ricinus communis 29600.m000548 I 0.418
Ssrp Drosophila melanogaster FBgn0010278 N 0.415
GF12460 Drosophila ananassae FBgn0089497 N 0.415
GD25013 Drosophila simulans FBgn0196325 N 0.415
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.415