Bra026498 (Brassica rapa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Bra026498 T326712_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.432 0.551
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra026498.1-P Sox 127 195

Links

Other Sox family TFs
Other Brassica rapa TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g014140 Brassica oleracea Bo9g014140 I 0.741
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.731
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.731
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.703
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.651
Bo2g160920 Brassica oleracea Bo2g160920 I 0.636
Bra029371 Brassica rapa Bra029371 I 0.636
Cla009222 Citrullus lanatus Cla009222 I 0.619
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.619
HMGB7 Arabidopsis thaliana AT5G23420 N 0.605
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.605
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.600
Pm006054 Prunus mume Pm006054 I 0.600
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.589
MDP0000205665 Malus domestica MDP0000205665 I 0.581
TCM_007659 Theobroma cacao TCM_007659 I 0.573
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.570
30131.m007272 Ricinus communis 30131.m007272 I 0.567
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.563
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.560
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.556
mgf009124m Mimulus guttatus mgf009124m N 0.555
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.551
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.549
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.541
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.541
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.528
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.519
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.513
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.512
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.512
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.499
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.499
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.499
OBART08G00070 Oryza barthii OBART08G00070 I 0.499
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.499
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.499
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.499
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.499
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.499
OS08G0101100 Oryza sativa OS08G0101100 I 0.499
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.495
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.495
Ca_05351 Cicer arietinum Ca_05351 I 0.493
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.487
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.485
PK03866.1 Cannabis sativa PK03866.1 I 0.484
OB08G10120 Oryza brachyantha OB08G10120 N 0.481
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.477
Bra009681 Brassica rapa Bra009681 N 0.476
Si014434m.g Setaria italica Si014434m.g N 0.473
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.473
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.472
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.470
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.468
AAEL011425 Aedes aegypti AAEL011425 I 0.467
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.464
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.463
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.463
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.463
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.462
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.457
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.442
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.442
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.441
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.440
Cla018386 Citrullus lanatus Cla018386 I 0.440
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.438
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.433
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.433
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.433
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.433
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.433
HMG-1 Pisum sativum Q41026_PEA D 0.432
L798_13679 Zootermopsis nevadensis L798_13679 N 0.431
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.430
29600.m000548 Ricinus communis 29600.m000548 I 0.429
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.429
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.428
OSTLU_15773 Ostreococcus lucimarinus OSTLU_15773 N 0.424
HMGB1 Arabidopsis thaliana AT3G51880 I 0.423
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.423
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.423
Ca_19340 Cicer arietinum Ca_19340 I 0.423
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.423
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.423
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.423
HMGB2 Arabidopsis thaliana AT1G20693 I 0.422
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.422
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.422
HMEL015307 Heliconius melpomene HMEL015307 N 0.422
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.422
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.422
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.422
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.422
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.420
Bo7g101270 Brassica oleracea Bo7g101270 I 0.418
Ssrp Drosophila melanogaster FBgn0010278 N 0.415
GF12460 Drosophila ananassae FBgn0089497 N 0.415
GD25013 Drosophila simulans FBgn0196325 N 0.415