MDP0000205665 (Malus domestica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 MDP0000205665 T334600_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.452 0.545
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000205665 Sox 217 284

Links

Other Sox family TFs
Other Malus domestica TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.727
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.722
Pm006054 Prunus mume Pm006054 I 0.722
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.689
TCM_007659 Theobroma cacao TCM_007659 I 0.652
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.645
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.640
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.640
OBART08G00070 Oryza barthii OBART08G00070 I 0.640
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.640
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.640
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.640
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.640
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.640
OS08G0101100 Oryza sativa OS08G0101100 I 0.640
Bo2g160920 Brassica oleracea Bo2g160920 I 0.639
Bra029371 Brassica rapa Bra029371 I 0.639
Cla009222 Citrullus lanatus Cla009222 I 0.639
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.639
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.636
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.623
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.623
OB08G10120 Oryza brachyantha OB08G10120 N 0.621
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.620
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.620
Si014434m.g Setaria italica Si014434m.g N 0.602
30131.m007272 Ricinus communis 30131.m007272 I 0.598
PK03866.1 Cannabis sativa PK03866.1 I 0.594
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.592
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.592
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.592
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.591
Bo9g014140 Brassica oleracea Bo9g014140 I 0.581
Bra026498 Brassica rapa Bra026498 I 0.581
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.578
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.569
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.567
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.564
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.564
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.552
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.546
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.544
mgf009124m Mimulus guttatus mgf009124m N 0.542
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.541
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.541
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.539
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.534
Ca_05351 Cicer arietinum Ca_05351 I 0.521
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.514
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.513
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.505
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.504
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.500
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.490
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.490
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.484
HMEL015307 Heliconius melpomene HMEL015307 N 0.484
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.481
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.480
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.480
HMGB7 Arabidopsis thaliana AT5G23420 N 0.479
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.479
Ssrp Drosophila melanogaster FBgn0010278 N 0.475
GF12460 Drosophila ananassae FBgn0089497 N 0.475
GG19998 Drosophila erecta FBgn0112197 N 0.475
GD25013 Drosophila simulans FBgn0196325 N 0.475
GJ21774 Drosophila virilis FBgn0208892 N 0.475
GE11532 Drosophila yakuba FBgn0229332 N 0.475
MDOA007633 Musca domestica MDOA007633 N 0.475
GH21151 Drosophila grimshawi FBgn0128613 N 0.474
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.472
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.472
AAEL002381 Aedes aegypti AAEL002381 N 0.471
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.471
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.471
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.470
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.470
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.470
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.470
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.468
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.468
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.468
KGM_13851 Danaus plexippus KGM_13851 N 0.465
ENSMMUP00000037751 Macaca fascicularis ENSMMUP00000037751 N 0.461
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.460
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.460
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.460
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.459
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.459
AMTR_s00046p00227790 Amborella trichopoda AMTR_s00046p00227790 N 0.457
OSTLU_15773 Ostreococcus lucimarinus OSTLU_15773 N 0.456
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.456
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.456
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.456
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.455
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.455
HMG-1 Pisum sativum Q41026_PEA D 0.452
L798_13679 Zootermopsis nevadensis L798_13679 N 0.451
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.451
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.451
gene00778-v1.0-hybrid Fragaria vesca gene00778-v1.0-hybrid N 0.450
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.449
GI18750 Drosophila mojavensis FBgn0141489 N 0.448
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.445
mgf014518m Mimulus guttatus mgf014518m I 0.445
Bra002073 Brassica rapa Bra002073 I 0.444
TC012866 Tribolium castaneum TC012866 N 0.443
TCM_042534 Theobroma cacao TCM_042534 I 0.442
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.442
AAEL011425 Aedes aegypti AAEL011425 I 0.440
HMGB1 Arabidopsis thaliana AT3G51880 I 0.440
Bo7g101270 Brassica oleracea Bo7g101270 I 0.440
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.440
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.440
mgf009330m Mimulus guttatus mgf009330m I 0.440
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.440
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.440
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.440
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.440
HMGB2 Arabidopsis thaliana AT1G20693 I 0.439
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.439
Ca_19340 Cicer arietinum Ca_19340 I 0.439
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.439
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.439
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.439
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.436
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.434
LCUP005047 Lucilia cuprina LCUP005047 N 0.434
ENSOGAG00000034481 Otolemur garnettii ENSOGAG00000034481 N 0.433
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.433
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.433
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.433
HHAL000319-PA Halyomorpha halys HHAL000319-PA N 0.433
mgf006113m Mimulus guttatus mgf006113m I 0.432
mgf008076m Mimulus guttatus mgf008076m I 0.432
mgf016608m Mimulus guttatus mgf016608m I 0.432
HMGB4 Arabidopsis thaliana AT2G17560 I 0.431
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.431
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.431
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.431
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.431
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.430
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.430
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.430
mgf016363m Mimulus guttatus mgf016363m I 0.430
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.428
Bo8g081200 Brassica oleracea Bo8g081200 I 0.427
Ssrp Drosophila pseudoobscura FBgn0078456 N 0.427
GL11071 Drosophila persimilis FBgn0148681 N 0.427
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.427
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.424
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.424
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.423
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.423
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.423
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.423
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.423
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.423
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.423
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.423
Cla018386 Citrullus lanatus Cla018386 I 0.423
Pm002934 Prunus mume Pm002934 I 0.423
e_gw1.6.1001.1 Ostreococcus RCC809 e_gw1.6.1001.1 N 0.423
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.423
ETH_00031100 Eimeria tenella ETH_00031100 I 0.422
SPRG_10438 Saprolegnia parasitica SPRG_10438 N 0.421
29600.m000548 Ricinus communis 29600.m000548 I 0.421
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.420
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.420
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.420
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.420
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.420
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.419
OBART06G28090 Oryza barthii OBART06G28090 I 0.419
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.419
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.419
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.419
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.419
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.419
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.419
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.419
OS06G0728000 Oryza sativa OS06G0728000 I 0.419
Si007288m.g Setaria italica Si007288m.g I 0.419
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.419
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.419
Bra037266 Brassica rapa Bra037266 I 0.418
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.418
HMGB3 Arabidopsis thaliana AT1G20696 I 0.417
Bo7g061420 Brassica oleracea Bo7g061420 I 0.417
Bo8g070350 Brassica oleracea Bo8g070350 I 0.417
Bra025838 Brassica rapa Bra025838 I 0.417
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.417
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.417
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.417
Pm026798 Prunus mume Pm026798 I 0.417
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.417
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.417
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.417
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.417
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.417
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.417
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.417
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.416
Bo7g014280 Brassica oleracea Bo7g014280 I 0.415