Ciclev10016587m.g (Citrus clementina)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Ciclev10016587m.g T334437_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10016587m Sox 109 177

Links

Other Sox family TFs
Other Citrus clementina TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.741
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.625
MDP0000205665 Malus domestica MDP0000205665 I 0.623
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.621
Pm006054 Prunus mume Pm006054 I 0.621
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.614
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.614
OBART08G00070 Oryza barthii OBART08G00070 I 0.614
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.614
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.614
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.614
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.614
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.614
OS08G0101100 Oryza sativa OS08G0101100 I 0.614
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.605
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.603
TCM_007659 Theobroma cacao TCM_007659 I 0.601
OB08G10120 Oryza brachyantha OB08G10120 N 0.595
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.588
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.587
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.579
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.578
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.571
Cla009222 Citrullus lanatus Cla009222 I 0.568
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.568
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.568
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.566
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.553
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.552
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.552
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.546
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.546
Bo9g014140 Brassica oleracea Bo9g014140 I 0.541
Bra026498 Brassica rapa Bra026498 I 0.541
Si014434m.g Setaria italica Si014434m.g N 0.538
Bo2g160920 Brassica oleracea Bo2g160920 I 0.537
Bra029371 Brassica rapa Bra029371 I 0.537
30131.m007272 Ricinus communis 30131.m007272 I 0.528
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.527
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.518
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.515
mgf009124m Mimulus guttatus mgf009124m N 0.512
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.509
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.508
HMGB7 Arabidopsis thaliana AT5G23420 N 0.504
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.504
PK03866.1 Cannabis sativa PK03866.1 I 0.502
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.494
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.493
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.492
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.489
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.489
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.484
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.483
29669.m000844 Ricinus communis 29669.m000844 I 0.480
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.478
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.478
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.476
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.476
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.471
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.471
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.471
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.471
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.469
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.469
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.469
Ca_05351 Cicer arietinum Ca_05351 I 0.469
Bo5g030580 Brassica oleracea Bo5g030580 I 0.468
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.467
TCM_042534 Theobroma cacao TCM_042534 I 0.465
Ssrp Drosophila melanogaster FBgn0010278 N 0.462
GF12460 Drosophila ananassae FBgn0089497 N 0.462
GG19998 Drosophila erecta FBgn0112197 N 0.462
GD25013 Drosophila simulans FBgn0196325 N 0.462
GJ21774 Drosophila virilis FBgn0208892 N 0.462
GE11532 Drosophila yakuba FBgn0229332 N 0.462
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.462
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.462
MDOA007633 Musca domestica MDOA007633 N 0.462
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.461
GH21151 Drosophila grimshawi FBgn0128613 N 0.461
mgf014518m Mimulus guttatus mgf014518m I 0.460
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.459
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.459
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.458
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.458
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.457
EDI_049480 Entamoeba dispar EDI_049480 N 0.456
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.453
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.453
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.452
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.452
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.452
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.451
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.450
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.449
mgf006113m Mimulus guttatus mgf006113m I 0.447
mgf008076m Mimulus guttatus mgf008076m I 0.447
mgf016608m Mimulus guttatus mgf016608m I 0.447
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.447
EHI_045480 Entamoeba histolytica EHI_045480 N 0.446
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.446
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.446
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.444
HMEL015307 Heliconius melpomene HMEL015307 N 0.444
ENSOGAG00000034481 Otolemur garnettii ENSOGAG00000034481 N 0.443
mgf009330m Mimulus guttatus mgf009330m I 0.443
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.442
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.441
HMGB3 Arabidopsis thaliana AT1G20696 I 0.440
Bo7g061420 Brassica oleracea Bo7g061420 I 0.440
Bo8g070350 Brassica oleracea Bo8g070350 I 0.440
Bra025838 Brassica rapa Bra025838 I 0.440
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.440
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.440
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.440
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.440
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.440
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.440
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.440
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.440
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.440
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.439
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.439
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.437
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.437
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.437
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.436
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.436
GI18750 Drosophila mojavensis FBgn0141489 N 0.435
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.434
GK22092 Drosophila willistoni FBgn0224077 N 0.433
ACHR003271 Anopheles christyi ACHR003271 I 0.433
Pm026798 Prunus mume Pm026798 I 0.431
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.430
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.430
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.430
MDP0000607529 Malus domestica MDP0000607529 I 0.430
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.426
KGM_13851 Danaus plexippus KGM_13851 N 0.425
ENSMMUP00000037751 Macaca fascicularis ENSMMUP00000037751 N 0.425
mgf000913m Mimulus guttatus mgf000913m I 0.425
TCM_000068 Theobroma cacao TCM_000068 I 0.424
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.424
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.424
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.424
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.423
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.423
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.423
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.423
LCUP005047 Lucilia cuprina LCUP005047 N 0.421
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.420
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.420
L798_13679 Zootermopsis nevadensis L798_13679 N 0.419
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.419
Pm018913 Prunus mume Pm018913 I 0.419
MDP0000362980 Malus domestica MDP0000362980 I 0.419
MDP0000757111 Malus domestica MDP0000757111 I 0.419
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.419
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.419
Ca_09896 Cicer arietinum Ca_09896 I 0.418
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.417
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.417
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.417
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.417
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.417
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.417
Cla009093 Citrullus lanatus Cla009093 I 0.417
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.417
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.417
AMTR_s00046p00227790 Amborella trichopoda AMTR_s00046p00227790 N 0.416
Ssrp Drosophila pseudoobscura FBgn0078456 N 0.415
GL11071 Drosophila persimilis FBgn0148681 N 0.415
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.415
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.415
PK11149.1 Cannabis sativa PK11149.1 I 0.415