Thhalv10004817m.g (Eutrema salsugineum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Thhalv10004817m.g T334727_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10004817m Sox 118 184

Links

Other Sox family TFs
Other Eutrema salsugineum TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g160920 Brassica oleracea Bo2g160920 I 0.675
Bra029371 Brassica rapa Bra029371 I 0.675
Bo9g014140 Brassica oleracea Bo9g014140 I 0.651
Bra026498 Brassica rapa Bra026498 I 0.651
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.641
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.641
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.639
Pm006054 Prunus mume Pm006054 I 0.639
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.628
MDP0000205665 Malus domestica MDP0000205665 I 0.620
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.614
Cla009222 Citrullus lanatus Cla009222 I 0.594
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.594
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.590
30131.m007272 Ricinus communis 30131.m007272 I 0.575
TCM_007659 Theobroma cacao TCM_007659 I 0.547
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.544
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.538
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.538
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.538
OBART08G00070 Oryza barthii OBART08G00070 I 0.538
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.538
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.538
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.538
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.538
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.538
OS08G0101100 Oryza sativa OS08G0101100 I 0.538
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.537
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.537
mgf009124m Mimulus guttatus mgf009124m N 0.532
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.524
PK03866.1 Cannabis sativa PK03866.1 I 0.523
OB08G10120 Oryza brachyantha OB08G10120 N 0.519
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.518
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.518
HMGB7 Arabidopsis thaliana AT5G23420 N 0.515
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.515
Si014434m.g Setaria italica Si014434m.g N 0.512
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.511
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.507
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.503
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.502
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.500
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.490
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.487
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.487
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.480
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.477
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.470
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.470
Ca_05351 Cicer arietinum Ca_05351 I 0.467
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.466
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.466
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.462
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.460
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.459
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.451
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.448
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.447
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.447
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.445
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.445
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.444
AAEL011425 Aedes aegypti AAEL011425 I 0.442
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.438
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.438
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.437
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.437
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.435
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.432
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.422
HMEL015307 Heliconius melpomene HMEL015307 N 0.422
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.416
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.416
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.415