Pm006054 (Prunus mume)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pm006054 T333833_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.471 0.582
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm006054 Sox 108 175

Links

Other Sox family TFs
Other Prunus mume TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.741
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.724
MDP0000205665 Malus domestica MDP0000205665 I 0.722
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.686
Bo2g160920 Brassica oleracea Bo2g160920 I 0.658
Bra029371 Brassica rapa Bra029371 I 0.658
TCM_007659 Theobroma cacao TCM_007659 I 0.650
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.642
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.639
Cla009222 Citrullus lanatus Cla009222 I 0.637
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.637
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.634
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.629
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.629
OBART08G00070 Oryza barthii OBART08G00070 I 0.629
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.629
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.629
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.629
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.629
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.629
OS08G0101100 Oryza sativa OS08G0101100 I 0.629
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.621
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.621
30131.m007272 Ricinus communis 30131.m007272 I 0.617
PK03866.1 Cannabis sativa PK03866.1 I 0.613
Si014434m.g Setaria italica Si014434m.g N 0.612
OB08G10120 Oryza brachyantha OB08G10120 N 0.610
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.610
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.609
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.603
Bo9g014140 Brassica oleracea Bo9g014140 I 0.600
Bra026498 Brassica rapa Bra026498 I 0.600
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.589
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.589
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.580
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.577
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.576
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.563
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.562
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.562
mgf009124m Mimulus guttatus mgf009124m N 0.561
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.560
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.560
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.558
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.553
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.543
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.541
Ca_05351 Cicer arietinum Ca_05351 I 0.540
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.532
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.524
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.523
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.509
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.503
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.501
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.500
HMGB7 Arabidopsis thaliana AT5G23420 N 0.498
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.498
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.490
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.488
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.484
HMEL015307 Heliconius melpomene HMEL015307 N 0.484
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.481
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.481
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.481
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.481
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.481
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.480
AAEL002381 Aedes aegypti AAEL002381 N 0.479
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.479
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.478
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.478
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.478
Ssrp Drosophila melanogaster FBgn0010278 N 0.475
GF12460 Drosophila ananassae FBgn0089497 N 0.475
GG19998 Drosophila erecta FBgn0112197 N 0.475
GD25013 Drosophila simulans FBgn0196325 N 0.475
GJ21774 Drosophila virilis FBgn0208892 N 0.475
GE11532 Drosophila yakuba FBgn0229332 N 0.475
MDOA007633 Musca domestica MDOA007633 N 0.475
GH21151 Drosophila grimshawi FBgn0128613 N 0.474
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.472
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.472
HMG-1 Pisum sativum Q41026_PEA D 0.471
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.470
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.470
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.469
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.468
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.468
KGM_13851 Danaus plexippus KGM_13851 N 0.465
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.464
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.464
ENSMMUP00000037751 Macaca fascicularis ENSMMUP00000037751 N 0.461
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.460
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.460
HMGB1 Arabidopsis thaliana AT3G51880 I 0.459
Bo7g101270 Brassica oleracea Bo7g101270 I 0.459
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.459
L798_13679 Zootermopsis nevadensis L798_13679 N 0.459
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.459
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.459
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.459
HMGB2 Arabidopsis thaliana AT1G20693 I 0.458
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.458
Ca_19340 Cicer arietinum Ca_19340 I 0.458
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.458
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.458
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.458
OSTLU_15773 Ostreococcus lucimarinus OSTLU_15773 N 0.456
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.456
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.456
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.455
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.455
Bra002073 Brassica rapa Bra002073 I 0.454
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.452
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.452
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.451
TC012866 Tribolium castaneum TC012866 N 0.451
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.451
HMGB4 Arabidopsis thaliana AT2G17560 I 0.450
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.450
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.450
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.450
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.450
mgf016363m Mimulus guttatus mgf016363m I 0.449
GI18750 Drosophila mojavensis FBgn0141489 N 0.448
gene00778-v1.0-hybrid Fragaria vesca gene00778-v1.0-hybrid N 0.448
AMTR_s00046p00227790 Amborella trichopoda AMTR_s00046p00227790 N 0.447
Bo8g081200 Brassica oleracea Bo8g081200 I 0.446
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.446
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.446
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.443
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.443
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.442
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.442
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.442
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.442
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.442
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.442
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.442
Cla018386 Citrullus lanatus Cla018386 I 0.442
Pm002934 Prunus mume Pm002934 I 0.442
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.442
ENSOGAG00000034481 Otolemur garnettii ENSOGAG00000034481 N 0.441
AAEL011425 Aedes aegypti AAEL011425 I 0.440
29600.m000548 Ricinus communis 29600.m000548 I 0.440
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.439
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.439
TCM_042534 Theobroma cacao TCM_042534 I 0.439
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.438
OBART06G28090 Oryza barthii OBART06G28090 I 0.438
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.438
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.438
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.438
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.438
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.438
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.438
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.438
OS06G0728000 Oryza sativa OS06G0728000 I 0.438
Si007288m.g Setaria italica Si007288m.g I 0.438
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.438
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.438
Bra037266 Brassica rapa Bra037266 I 0.437
mgf009330m Mimulus guttatus mgf009330m I 0.437
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.437
Bo7g014280 Brassica oleracea Bo7g014280 I 0.434
mgf014518m Mimulus guttatus mgf014518m I 0.434
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.434
LCUP005047 Lucilia cuprina LCUP005047 N 0.434
HHAL000319-PA Halyomorpha halys HHAL000319-PA N 0.433
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.432
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.432
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.432
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.431
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.431
OB06G35870 Oryza brachyantha OB06G35870 I 0.431
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.431
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.431
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.431
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.430
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.430
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.430
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.430
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.430
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.429
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.429
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.428
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.428
Ssrp Drosophila pseudoobscura FBgn0078456 N 0.427
GL11071 Drosophila persimilis FBgn0148681 N 0.427
Ca_10725 Cicer arietinum Ca_10725 I 0.426
MDP0000607529 Malus domestica MDP0000607529 I 0.426
F775_27510 Aegilops tauschii F775_27510 I 0.425
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.425
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.425
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.425
KGM_13852 Danaus plexippus KGM_13852 I 0.422
MCINX001064 Melitaea cinxia MCINX001064 I 0.422
mgf006113m Mimulus guttatus mgf006113m I 0.422
mgf008076m Mimulus guttatus mgf008076m I 0.422
mgf016608m Mimulus guttatus mgf016608m I 0.422
ETH_00031100 Eimeria tenella ETH_00031100 I 0.422
PK11149.1 Cannabis sativa PK11149.1 I 0.422
SPRG_10438 Saprolegnia parasitica SPRG_10438 N 0.421
Bo1g006360 Brassica oleracea Bo1g006360 I 0.421
Bo7g117500 Brassica oleracea Bo7g117500 I 0.421
Bra011624 Brassica rapa Bra011624 I 0.421
Bra017723 Brassica rapa Bra017723 I 0.421
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.421
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.421
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.417
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.417
PK29786.1 Cannabis sativa PK29786.1 I 0.416
CpipJ_CPIJ002952 Culex pipiens CpipJ_CPIJ002952 N 0.415
AAEL011414 Aedes aegypti AAEL011414 N 0.415
HMGB3 Arabidopsis thaliana AT1G20696 I 0.415
Bo7g061420 Brassica oleracea Bo7g061420 I 0.415
Bo8g070350 Brassica oleracea Bo8g070350 I 0.415
Bra025838 Brassica rapa Bra025838 I 0.415
CPIJ002952 Culex quinquefasciatus CPIJ002952 N 0.415
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.415
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.415
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.415
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.415
Pm026798 Prunus mume Pm026798 I 0.415
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.415
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.415
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.415
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.415
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.415