30131.m007272 (Ricinus communis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 30131.m007272 T333896_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.442 0.574
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30131.m007272 Sox 100 168

Links

Other Sox family TFs
Other Ricinus communis TFs

219 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.617
Pm006054 Prunus mume Pm006054 I 0.617
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.603
Cla009222 Citrullus lanatus Cla009222 I 0.603
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.601
MDP0000205665 Malus domestica MDP0000205665 I 0.598
Bo2g160920 Brassica oleracea Bo2g160920 I 0.593
Bra029371 Brassica rapa Bra029371 I 0.593
TCM_007659 Theobroma cacao TCM_007659 I 0.588
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.575
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.574
Bra026498 Brassica rapa Bra026498 I 0.567
Bo9g014140 Brassica oleracea Bo9g014140 I 0.566
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.563
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.556
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.556
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.549
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.548
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.541
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.538
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.533
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.533
OBART08G00070 Oryza barthii OBART08G00070 I 0.533
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.533
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.533
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.533
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.533
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.533
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.533
OS08G0101100 Oryza sativa OS08G0101100 I 0.533
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.530
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.530
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.529
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.528
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.528
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.528
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.528
mgf009124m Mimulus guttatus mgf009124m N 0.527
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.525
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.522
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.520
PK03866.1 Cannabis sativa PK03866.1 I 0.517
Si014434m.g Setaria italica Si014434m.g N 0.516
OB08G10120 Oryza brachyantha OB08G10120 N 0.514
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.513
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.506
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.506
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.499
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.496
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.496
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.496
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.491
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.489
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.489
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.487
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.486
Ca_05351 Cicer arietinum Ca_05351 I 0.484
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.484
HMEL015307 Heliconius melpomene HMEL015307 N 0.483
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.483
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.481
Ca_19340 Cicer arietinum Ca_19340 I 0.480
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.473
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.473
29600.m000548 Ricinus communis 29600.m000548 I 0.471
mgf016363m Mimulus guttatus mgf016363m I 0.471
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.470
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.469
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.468
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.467
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.467
OS06G0728000 Oryza sativa OS06G0728000 I 0.467
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.467
Si007288m.g Setaria italica Si007288m.g I 0.467
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.467
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.467
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.467
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.467
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.467
OBART06G28090 Oryza barthii OBART06G28090 I 0.467
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.467
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.467
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.465
HMGB7 Arabidopsis thaliana AT5G23420 N 0.465
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.465
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.464
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.464
Pm002934 Prunus mume Pm002934 I 0.464
KGM_13851 Danaus plexippus KGM_13851 N 0.464
Cla018386 Citrullus lanatus Cla018386 I 0.464
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.464
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.464
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.464
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.464
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.464
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.464
AAEL011425 Aedes aegypti AAEL011425 I 0.463
TCM_042534 Theobroma cacao TCM_042534 I 0.461
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.461
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.461
OB06G35870 Oryza brachyantha OB06G35870 I 0.460
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.460
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.460
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.460
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.459
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.458
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.458
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.456
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.456
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.455
Ca_10725 Cicer arietinum Ca_10725 I 0.455
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.454
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.454
F775_27510 Aegilops tauschii F775_27510 I 0.454
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.453
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.453
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.452
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.450
GI18750 Drosophila mojavensis FBgn0141489 N 0.447
PK29786.1 Cannabis sativa PK29786.1 I 0.445
TC012866 Tribolium castaneum TC012866 N 0.444
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.443
PK11149.1 Cannabis sativa PK11149.1 I 0.443
HMG-1 Pisum sativum Q41026_PEA D 0.442
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.442
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.442
AMTR_s00046p00227790 Amborella trichopoda AMTR_s00046p00227790 N 0.441
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.441
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.438
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.438
Cla023817 Citrullus lanatus Cla023817 I 0.438
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.437
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.436
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.436
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.436
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.436
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.436
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.435
Bo7g014280 Brassica oleracea Bo7g014280 I 0.434
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.434
estExt_fgenesh1_pg.C_2230007 Physcomitrella patens estExt_fgenesh1_pg.C_2230007 I 0.433
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.432
TCM_021706 Theobroma cacao TCM_021706 I 0.431
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.430
29701.m000600 Ricinus communis 29701.m000600 I 0.430
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.430
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.430
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.430
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.429
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.429
L798_13679 Zootermopsis nevadensis L798_13679 N 0.429
ENSMMUP00000037751 Macaca fascicularis ENSMMUP00000037751 N 0.429
HMGB2 Arabidopsis thaliana AT1G20693 I 0.429
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.429
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.429
TCM_000068 Theobroma cacao TCM_000068 I 0.428
OSTLU_15773 Ostreococcus lucimarinus OSTLU_15773 N 0.427
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.426
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.426
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.425
Bra002073 Brassica rapa Bra002073 I 0.425
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.425
30170.m014386 Ricinus communis 30170.m014386 I 0.425
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.425
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.425
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.424
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.423
HMGB1 Arabidopsis thaliana AT3G51880 I 0.423
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.423
Bo7g101270 Brassica oleracea Bo7g101270 I 0.423
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.423
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.423
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.423
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.423
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.423
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.423
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.422
Bo7g117500 Brassica oleracea Bo7g117500 I 0.421
Bra011624 Brassica rapa Bra011624 I 0.421
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.421
Bra017723 Brassica rapa Bra017723 I 0.421
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.421
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.421
HMGB4 Arabidopsis thaliana AT2G17560 I 0.421
Cla009093 Citrullus lanatus Cla009093 I 0.421
Bo1g006360 Brassica oleracea Bo1g006360 I 0.421
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.421
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.421
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.421
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.421
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.421
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.421
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.421
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.421
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.421
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.421
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.421
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.419
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.419
SPRG_10438 Saprolegnia parasitica SPRG_10438 N 0.417
GH21151 Drosophila grimshawi FBgn0128613 N 0.416
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.416
TCM_034406 Theobroma cacao TCM_034406 I 0.415
MDP0000362980 Malus domestica MDP0000362980 I 0.415
Pm018913 Prunus mume Pm018913 I 0.415
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.415
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.415
MDP0000757111 Malus domestica MDP0000757111 I 0.415
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.415
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.415
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.415
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.415
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.415
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.415
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.415
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.415
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.415
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.415
MDP0000275042 Malus domestica MDP0000275042 I 0.415