PK03866.1 (Cannabis sativa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 PK03866.1 T334922_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.455 0.522
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK03866.1 Sox 144 211

Links

Other Sox family TFs
Other Cannabis sativa TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.613
Pm006054 Prunus mume Pm006054 I 0.613
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.602
MDP0000205665 Malus domestica MDP0000205665 I 0.594
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.565
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.551
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.551
OBART08G00070 Oryza barthii OBART08G00070 I 0.551
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.551
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.551
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.551
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.551
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.551
OS08G0101100 Oryza sativa OS08G0101100 I 0.551
Bo2g160920 Brassica oleracea Bo2g160920 I 0.548
Bra029371 Brassica rapa Bra029371 I 0.548
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.542
TCM_007659 Theobroma cacao TCM_007659 I 0.535
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.535
OB08G10120 Oryza brachyantha OB08G10120 N 0.533
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.532
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.523
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.523
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.523
Si014434m.g Setaria italica Si014434m.g N 0.522
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.521
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.521
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.521
30131.m007272 Ricinus communis 30131.m007272 I 0.517
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.512
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.509
Cla009222 Citrullus lanatus Cla009222 I 0.508
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.508
Ca_05351 Cicer arietinum Ca_05351 I 0.502
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.502
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.502
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.489
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.489
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.488
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.486
Bo9g014140 Brassica oleracea Bo9g014140 I 0.484
Bra026498 Brassica rapa Bra026498 I 0.484
Bra002073 Brassica rapa Bra002073 I 0.479
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.476
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.474
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.473
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.473
HMGB4 Arabidopsis thaliana AT2G17560 I 0.471
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.470
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.468
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.467
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.467
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.467
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.467
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.465
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.465
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.465
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.465
Bra037266 Brassica rapa Bra037266 I 0.462
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.462
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.462
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.462
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.461
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.461
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.461
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.461
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.461
Bo7g014280 Brassica oleracea Bo7g014280 I 0.459
HMGB2 Arabidopsis thaliana AT1G20693 I 0.456
HMGB1 Arabidopsis thaliana AT3G51880 I 0.456
Bo7g101270 Brassica oleracea Bo7g101270 I 0.456
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.456
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.456
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.456
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.456
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.456
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.456
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.456
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.456
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.456
HMG-1 Pisum sativum Q41026_PEA D 0.455
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.454
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.448
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.446
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.446
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.446
mgf009124m Mimulus guttatus mgf009124m N 0.445
Bo8g081200 Brassica oleracea Bo8g081200 I 0.444
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.444
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.443
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.441
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.440
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.440
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.440
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.440
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.440
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.440
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.440
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.440
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.440
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.440
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.440
Cla018386 Citrullus lanatus Cla018386 I 0.440
Pm002934 Prunus mume Pm002934 I 0.440
Pm026798 Prunus mume Pm026798 I 0.440
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.440
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.439
mgf009330m Mimulus guttatus mgf009330m I 0.439
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.438
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.438
TCM_042534 Theobroma cacao TCM_042534 I 0.437
Ca_09896 Cicer arietinum Ca_09896 I 0.437
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.436
Ca_19340 Cicer arietinum Ca_19340 I 0.433
mgf016363m Mimulus guttatus mgf016363m I 0.433
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.433
HHAL000319-PA Halyomorpha halys HHAL000319-PA N 0.433
Bo1g006360 Brassica oleracea Bo1g006360 I 0.432
Bo7g117500 Brassica oleracea Bo7g117500 I 0.432
Bra011624 Brassica rapa Bra011624 I 0.432
Bra017723 Brassica rapa Bra017723 I 0.432
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.430
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.429
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.429
OB06G35870 Oryza brachyantha OB06G35870 I 0.429
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.429
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.429
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.428
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.428
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.427
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.427
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.427
F775_27510 Aegilops tauschii F775_27510 I 0.423
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.423
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.423
MDP0000607529 Malus domestica MDP0000607529 I 0.423
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.423
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.422
OBART06G28090 Oryza barthii OBART06G28090 I 0.422
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.422
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.422
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.422
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.422
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.422
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.422
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.422
OS06G0728000 Oryza sativa OS06G0728000 I 0.422
Si007288m.g Setaria italica Si007288m.g I 0.422
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.422
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.422
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.421
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.421
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.418
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.418
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.417
Cla009093 Citrullus lanatus Cla009093 I 0.417
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.417
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.417
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.417
AAEL002381 Aedes aegypti AAEL002381 N 0.415
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.415