MTR_7g082820 (Medicago truncatula)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 MTR_7g082820 T331385_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.608 0.647
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES80622 Sox 13 81

Links

Other Sox family TFs
Other Medicago truncatula TFs

263 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.616
HMGB2 Arabidopsis thaliana AT1G20693 I 0.613
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.613
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.613
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.613
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.613
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.608
HMG-1 Pisum sativum Q41026_PEA D 0.608
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.606
HMGB1 Arabidopsis thaliana AT3G51880 I 0.605
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.605
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.605
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.605
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.605
Bo8g081200 Brassica oleracea Bo8g081200 I 0.600
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.600
HMGB4 Arabidopsis thaliana AT2G17560 I 0.598
Bra037266 Brassica rapa Bra037266 I 0.598
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.598
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.598
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.598
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.598
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.598
Bo7g101270 Brassica oleracea Bo7g101270 I 0.595
Bra002073 Brassica rapa Bra002073 I 0.590
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.586
PK29786.1 Cannabis sativa PK29786.1 I 0.584
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.582
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.582
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.577
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.577
Ca_19340 Cicer arietinum Ca_19340 I 0.577
Cla023817 Citrullus lanatus Cla023817 I 0.577
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.577
mgf016363m Mimulus guttatus mgf016363m I 0.577
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.577
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.577
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.577
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.577
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.573
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.573
MDP0000607529 Malus domestica MDP0000607529 I 0.572
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.571
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.571
Bo1g006360 Brassica oleracea Bo1g006360 I 0.570
Bo7g014280 Brassica oleracea Bo7g014280 I 0.570
Bo7g117500 Brassica oleracea Bo7g117500 I 0.570
Bra011624 Brassica rapa Bra011624 I 0.570
Bra017723 Brassica rapa Bra017723 I 0.570
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.570
Pm026798 Prunus mume Pm026798 I 0.570
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.570
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.569
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.568
F775_27510 Aegilops tauschii F775_27510 I 0.568
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.568
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.568
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.568
OB06G35870 Oryza brachyantha OB06G35870 I 0.568
OBART06G28090 Oryza barthii OBART06G28090 I 0.568
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.568
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.568
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.568
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.568
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.568
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.568
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.568
OS06G0728000 Oryza sativa OS06G0728000 I 0.568
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.568
Si007288m.g Setaria italica Si007288m.g I 0.568
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.568
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.568
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.568
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.567
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.567
Ca_10725 Cicer arietinum Ca_10725 I 0.567
Pm002934 Prunus mume Pm002934 I 0.567
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.565
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.561
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.560
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.560
HMGB3 Arabidopsis thaliana AT1G20696 I 0.559
Ca_05351 Cicer arietinum Ca_05351 I 0.556
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.556
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.555
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.555
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.555
mgf009330m Mimulus guttatus mgf009330m I 0.555
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.555
Bo7g061420 Brassica oleracea Bo7g061420 I 0.553
Bo8g070350 Brassica oleracea Bo8g070350 I 0.553
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.553
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.553
Cla018386 Citrullus lanatus Cla018386 I 0.553
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.553
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.553
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.553
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.553
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.552
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.552
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.551
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.551
TCM_021706 Theobroma cacao TCM_021706 I 0.550
Ca_04825 Cicer arietinum Ca_04825 I 0.550
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.550
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.550
Bra025838 Brassica rapa Bra025838 I 0.548
Ca_09896 Cicer arietinum Ca_09896 I 0.548
mgf006113m Mimulus guttatus mgf006113m I 0.547
mgf008076m Mimulus guttatus mgf008076m I 0.547
mgf016608m Mimulus guttatus mgf016608m I 0.547
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.546
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.546
PK11149.1 Cannabis sativa PK11149.1 I 0.545
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.543
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.542
TCM_000068 Theobroma cacao TCM_000068 I 0.541
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.539
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.539
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.537
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.537
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.537
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.537
29669.m000844 Ricinus communis 29669.m000844 I 0.536
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.536
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.536
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.535
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.534
Pm018913 Prunus mume Pm018913 I 0.534
mgf014518m Mimulus guttatus mgf014518m I 0.534
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.534
MDP0000362980 Malus domestica MDP0000362980 I 0.534
MDP0000757111 Malus domestica MDP0000757111 I 0.534
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.534
29701.m000600 Ricinus communis 29701.m000600 I 0.533
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.533
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.533
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.533
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.533
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.533
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.532
Cla009093 Citrullus lanatus Cla009093 I 0.531
30170.m014386 Ricinus communis 30170.m014386 I 0.531
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.531
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.531
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.531
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.531
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.531
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.531
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.531
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.530
MDP0000275042 Malus domestica MDP0000275042 I 0.529
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.528
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.528
OB09G25530 Oryza brachyantha OB09G25530 I 0.528
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.528
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.528
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.528
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.528
OS09G0551600 Oryza sativa OS09G0551600 I 0.528
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.528
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.527
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.527
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.527
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.527
TCM_034406 Theobroma cacao TCM_034406 I 0.527
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.527
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.527
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.527
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.527
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.527
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.527
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.524
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.524
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.524
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.524
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.523
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.523
Bo5g030580 Brassica oleracea Bo5g030580 I 0.521
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.518
Si031512m.g Setaria italica Si031512m.g I 0.518
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.518
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.518
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.513
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.510
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.510
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.507
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.507
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.507
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.507
29600.m000548 Ricinus communis 29600.m000548 I 0.507
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.507
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.507
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.507
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.506
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.498
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.497
TCM_042534 Theobroma cacao TCM_042534 I 0.494
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.493
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.492
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.492
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.491
HMGB5 Arabidopsis thaliana AT4G35570 I 0.489
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.489
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.485
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.484
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.481
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.478
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.476
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.474
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.474
mgf000913m Mimulus guttatus mgf000913m I 0.472
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.472
TCM_007659 Theobroma cacao TCM_007659 I 0.466
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.465
TGME49_010410 Toxoplasma gondii TGME49_010410 I 0.461
NCLIV_043670 Neospora caninum NCLIV_043670 I 0.461
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.461
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.459
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.456
TP03_0469 Theileria parva TP03_0469 I 0.451
TA04735 Theileria annulata TA04735 I 0.446
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.443
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.443
Pm006054 Prunus mume Pm006054 I 0.443
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.443
PV09_01265 Verruconis gallopava PV09_01265 I 0.439
PK03866.1 Cannabis sativa PK03866.1 I 0.439
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.438
Cla009222 Citrullus lanatus Cla009222 I 0.436
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.436
MPH_02795 Macrophomina phaseolina MPH_02795 I 0.435
SEPMUDRAFT_150255 Sphaerulina musiva SEPMUDRAFT_150255 I 0.435
UCRNP2_2405 Neofusicoccum parvum UCRNP2_2405 I 0.435
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.434
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.434
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.434
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.434
MDP0000301546 Malus domestica MDP0000301546 I 0.431
PK14705.1 Cannabis sativa PK14705.1 I 0.431
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.429
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.429
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.426
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.426
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.425
MDP0000205665 Malus domestica MDP0000205665 I 0.424
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.421
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.419
AACERI_AaceriADL310W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL310W I 0.417
AGOS_ADL310W Ashbya gossypii AGOS_ADL310W I 0.417
Ecym_7459 Eremothecium cymbalariae Ecym_7459 I 0.417
Kpol_376p1 Vanderwaltozyma polyspora Kpol_376p1 I 0.417
LALA0_S09e03686g Lachancea lanzarotensis LALA0_S09e03686g I 0.417
TBLA_0I02240 Tetrapisispora blattae TBLA_0I02240 I 0.417
TDEL_0C04750 Torulaspora delbrueckii TDEL_0C04750 I 0.417
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.417
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.417
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.417
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.417
ZBAI_00368 Zygosaccharomyces bailii ZBAI_00368 I 0.417
ZBAI_05520 Zygosaccharomyces bailii ZBAI_05520 I 0.417
ZYRO0C15752g Zygosaccharomyces rouxii ZYRO0C15752g I 0.417
Kwal_12539 Kluyveromyces waltii Kwal_12539 I 0.417