orange1.1g044275m.g (Citrus sinensis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 orange1.1g044275m.g T334653_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.507 0.652
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g044275m Sox 42 111

Links

Other Sox family TFs
Other Citrus sinensis TFs

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29600.m000548 Ricinus communis 29600.m000548 I 0.592
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.536
mgf014518m Mimulus guttatus mgf014518m I 0.521
mgf016608m Mimulus guttatus mgf016608m I 0.521
mgf006113m Mimulus guttatus mgf006113m I 0.521
mgf008076m Mimulus guttatus mgf008076m I 0.521
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.517
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.517
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.517
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.517
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.517
MDP0000607529 Malus domestica MDP0000607529 I 0.517
HMGB2 Arabidopsis thaliana AT1G20693 I 0.517
Bra002073 Brassica rapa Bra002073 I 0.517
mgf009330m Mimulus guttatus mgf009330m I 0.515
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.513
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.513
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.513
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.512
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.511
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.511
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.507
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.507
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.507
HMG-1 Pisum sativum Q41026_PEA D 0.507
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.507
HMGB3 Arabidopsis thaliana AT1G20696 I 0.507
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.507
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.507
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.507
Bo7g061420 Brassica oleracea Bo7g061420 I 0.507
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.507
Bo8g070350 Brassica oleracea Bo8g070350 I 0.507
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.507
Bra025838 Brassica rapa Bra025838 I 0.507
Pm026798 Prunus mume Pm026798 I 0.507
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.506
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.504
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.503
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.503
HMGB1 Arabidopsis thaliana AT3G51880 I 0.501
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.501
Ca_09896 Cicer arietinum Ca_09896 I 0.501
Bo7g101270 Brassica oleracea Bo7g101270 I 0.501
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.501
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.501
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.501
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.494
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.494
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.494
Pm002934 Prunus mume Pm002934 I 0.494
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.493
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.493
Bra037266 Brassica rapa Bra037266 I 0.492
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.492
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.491
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.491
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.491
HMGB4 Arabidopsis thaliana AT2G17560 I 0.491
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.491
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.490
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.490
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.490
OB06G35870 Oryza brachyantha OB06G35870 I 0.490
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.490
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.489
Bo7g014280 Brassica oleracea Bo7g014280 I 0.489
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.488
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.488
Bo8g081200 Brassica oleracea Bo8g081200 I 0.488
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.487
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.487
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.487
30170.m014386 Ricinus communis 30170.m014386 I 0.487
Ca_19340 Cicer arietinum Ca_19340 I 0.487
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.487
Ca_10725 Cicer arietinum Ca_10725 I 0.486
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.484
Cla018386 Citrullus lanatus Cla018386 I 0.484
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.484
Si007288m.g Setaria italica Si007288m.g I 0.484
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.484
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.484
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.484
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.484
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.484
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.484
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.484
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.484
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.484
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.484
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.484
OBART06G28090 Oryza barthii OBART06G28090 I 0.484
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.484
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.484
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.484
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.484
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.484
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.484
F775_27510 Aegilops tauschii F775_27510 I 0.484
Cla009093 Citrullus lanatus Cla009093 I 0.484
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.484
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.484
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.484
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.484
OS06G0728000 Oryza sativa OS06G0728000 I 0.484
Ca_05351 Cicer arietinum Ca_05351 I 0.481
estExt_Genewise1Plus.C_51175 Fragilariopsis cylindrus estExt_Genewise1Plus.C_51175 N 0.480
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.479
Bo5g030580 Brassica oleracea Bo5g030580 I 0.479
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.479
MDP0000275042 Malus domestica MDP0000275042 I 0.478
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.478
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.478
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.478
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.478
TCM_034406 Theobroma cacao TCM_034406 I 0.478
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.478
mgf016363m Mimulus guttatus mgf016363m I 0.478
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.478
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.478
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.478
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.478
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.478
estExt_fgenesh1_pg.C_2230007 Physcomitrella patens estExt_fgenesh1_pg.C_2230007 I 0.477
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.476
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.476
29669.m000844 Ricinus communis 29669.m000844 I 0.475
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.474
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.474
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.474
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.474
OB09G25530 Oryza brachyantha OB09G25530 I 0.474
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.474
Si031512m.g Setaria italica Si031512m.g I 0.474
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.474
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.474
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.474
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.474
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.474
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.474
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.474
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.474
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.474
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.472
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.471
PK27241.1 Cannabis sativa PK27241.1 I 0.470
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.468
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.468
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.468
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.468
MDP0000757111 Malus domestica MDP0000757111 I 0.468
Pm018913 Prunus mume Pm018913 I 0.468
MDP0000362980 Malus domestica MDP0000362980 I 0.468
OS09G0551600 Oryza sativa OS09G0551600 I 0.467
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.467
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.467
TCM_000068 Theobroma cacao TCM_000068 I 0.467
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.467
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.467
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.467
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.466
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.465
PCHAS_072200 Plasmodium chabaudi PCHAS_072200 I 0.464
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.463
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.463
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.461
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.460
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.460
29701.m000600 Ricinus communis 29701.m000600 I 0.460
Cla023817 Citrullus lanatus Cla023817 I 0.459
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.459
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.459
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.459
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.459
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.457
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.456
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.456
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.455
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.454
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.454
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.454
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.454
Bo7g117500 Brassica oleracea Bo7g117500 I 0.452
Bo1g006360 Brassica oleracea Bo1g006360 I 0.452
Bra011624 Brassica rapa Bra011624 I 0.452
Bra017723 Brassica rapa Bra017723 I 0.452
PK29786.1 Cannabis sativa PK29786.1 I 0.452
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.451
TCM_021706 Theobroma cacao TCM_021706 I 0.451
PK11149.1 Cannabis sativa PK11149.1 I 0.451
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.450
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.450
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.447
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.447
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.447
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.447
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.447
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.444
NDAI_0A05290 Naumovozyma dairenensis NDAI_0A05290 I 0.443
NV15871 Nasonia vitripennis NV15871 N 0.441
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.441
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.440
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.440
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.440
PKH_051400 Plasmodium knowlesi PKH_051400 I 0.437
PVX_089520 Plasmodium vivax PVX_089520 I 0.437
MAL8P1.72 Plasmodium falciparum MAL8P1.72 I 0.437
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.435
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.435
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.435
IGS.gm_15_00221 Chlorella NC64A IGS.gm_15_00221 I 0.434
NCLIV_043670 Neospora caninum NCLIV_043670 I 0.434
TGME49_010410 Toxoplasma gondii TGME49_010410 I 0.434
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.433
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.433
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.433
TCM_042534 Theobroma cacao TCM_042534 I 0.433
ETH_00031100 Eimeria tenella ETH_00031100 I 0.431
PV09_01265 Verruconis gallopava PV09_01265 I 0.431
EDP44509.1 Malassezia globosa EDP44509.1 N 0.430
PBANKA_071290 Plasmodium berghei PBANKA_071290 I 0.430
PY07077 Plasmodium yoelii PY07077 I 0.430
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.428
SEPMUDRAFT_150255 Sphaerulina musiva SEPMUDRAFT_150255 I 0.425
YALI0_C11671g Yarrowia lipolytica YALI0_C11671g I 0.424
KNAG_0H00800 Kazachstania naganishii KNAG_0H00800 I 0.421
PY05184 Plasmodium yoelii PY05184 I 0.420
PVX_084190 Plasmodium vivax PVX_084190 I 0.420
PKH_130170 Plasmodium knowlesi PKH_130170 I 0.420
PCHAS_060370 Plasmodium chabaudi PCHAS_060370 I 0.420
PBANKA_060190 Plasmodium berghei PBANKA_060190 I 0.420
PFL0145c Plasmodium falciparum PFL0145c I 0.420
Phatr3_J8737 Phaeodactylum tricornutum Phatr3_J8737 N 0.419
mgf000913m Mimulus guttatus mgf000913m I 0.418
Ca_04825 Cicer arietinum Ca_04825 I 0.418
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.418
Cla009222 Citrullus lanatus Cla009222 I 0.418
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.417
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.417
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.415
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.415