SELMODRAFT_75453 (Selaginella moellendorffii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 SELMODRAFT_75453 T332504_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.418 0.551
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFJ38183 Sox 36 105

Links

Other Sox family TFs
Other Selaginella moellendorffii TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.741
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.566
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.556
TCM_042534 Theobroma cacao TCM_042534 I 0.544
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.544
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.543
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.540
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.540
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.536
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.532
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.531
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.531
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.531
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.525
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.524
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.524
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.524
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.524
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.523
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.520
Bo5g030580 Brassica oleracea Bo5g030580 I 0.516
30170.m014386 Ricinus communis 30170.m014386 I 0.516
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.516
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.516
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.516
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.516
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.515
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.515
Si031512m.g Setaria italica Si031512m.g I 0.515
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.515
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.515
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.513
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.513
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.512
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.512
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.512
TCM_034406 Theobroma cacao TCM_034406 I 0.511
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.511
MDP0000275042 Malus domestica MDP0000275042 I 0.511
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.511
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.508
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.507
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.507
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.507
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.507
Cla009093 Citrullus lanatus Cla009093 I 0.507
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.507
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.507
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.507
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.507
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.507
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.507
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.506
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.504
Pm018913 Prunus mume Pm018913 I 0.504
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.504
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.504
MDP0000362980 Malus domestica MDP0000362980 I 0.504
MDP0000757111 Malus domestica MDP0000757111 I 0.504
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.504
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.503
29669.m000844 Ricinus communis 29669.m000844 I 0.502
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.499
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.499
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.497
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.497
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.495
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.495
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.494
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.491
TCM_000068 Theobroma cacao TCM_000068 I 0.490
mgf014518m Mimulus guttatus mgf014518m I 0.490
Bra025838 Brassica rapa Bra025838 I 0.488
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.488
TCM_021706 Theobroma cacao TCM_021706 I 0.488
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.487
OB09G25530 Oryza brachyantha OB09G25530 I 0.487
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.487
29600.m000548 Ricinus communis 29600.m000548 I 0.487
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.486
PK11149.1 Cannabis sativa PK11149.1 I 0.486
Bo7g061420 Brassica oleracea Bo7g061420 I 0.484
Bo8g070350 Brassica oleracea Bo8g070350 I 0.484
mgf006113m Mimulus guttatus mgf006113m I 0.484
mgf008076m Mimulus guttatus mgf008076m I 0.484
mgf016608m Mimulus guttatus mgf016608m I 0.484
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.483
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.483
mgf009330m Mimulus guttatus mgf009330m I 0.481
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.480
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.480
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.480
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.480
OS09G0551600 Oryza sativa OS09G0551600 I 0.480
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.480
HMGB3 Arabidopsis thaliana AT1G20696 I 0.478
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.478
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.478
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.478
Pm026798 Prunus mume Pm026798 I 0.478
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.478
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.478
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.478
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.478
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.478
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.477
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.477
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.473
MDP0000607529 Malus domestica MDP0000607529 I 0.472
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.471
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.471
Ca_05351 Cicer arietinum Ca_05351 I 0.471
Pm002934 Prunus mume Pm002934 I 0.471
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.470
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.470
Ca_09896 Cicer arietinum Ca_09896 I 0.470
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.468
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.468
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.468
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.464
Ca_19340 Cicer arietinum Ca_19340 I 0.464
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.463
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.462
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.461
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.461
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.461
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.461
Ca_10725 Cicer arietinum Ca_10725 I 0.461
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.461
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.460
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.460
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.460
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.460
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.457
F775_27510 Aegilops tauschii F775_27510 I 0.457
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.457
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.457
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.457
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.457
OB06G35870 Oryza brachyantha OB06G35870 I 0.457
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.457
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.457
mgf016363m Mimulus guttatus mgf016363m I 0.454
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.454
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.454
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.451
OBART06G28090 Oryza barthii OBART06G28090 I 0.451
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.451
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.451
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.451
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.451
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.451
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.451
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.451
OS06G0728000 Oryza sativa OS06G0728000 I 0.451
Si007288m.g Setaria italica Si007288m.g I 0.451
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.451
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.451
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.450
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.450
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.449
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.445
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.445
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.440
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.440
Si003021m.g Setaria italica Si003021m.g N 0.440
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.438
Cla009222 Citrullus lanatus Cla009222 I 0.436
29701.m000600 Ricinus communis 29701.m000600 I 0.436
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.436
HMGB2 Arabidopsis thaliana AT1G20693 I 0.435
Bo7g014280 Brassica oleracea Bo7g014280 I 0.435
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.435
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.435
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.435
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.435
HelroG160584 Helobdella robusta HelroG160584 N 0.432
CHLREDRAFT_142283 Chlamydomonas reinhardtii CHLREDRAFT_142283 N 0.431
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.431
Bo7g101270 Brassica oleracea Bo7g101270 I 0.430
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.429
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.429
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.428
Cla023817 Citrullus lanatus Cla023817 I 0.428
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.428
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.428
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.428
Bra002073 Brassica rapa Bra002073 I 0.427
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.427
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.427
Cla018386 Citrullus lanatus Cla018386 I 0.427
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.427
HMGB1 Arabidopsis thaliana AT3G51880 I 0.425
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.425
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.425
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.425
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.425
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.425
PK27241.1 Cannabis sativa PK27241.1 I 0.424
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.423
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.423
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.423
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.423
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.423
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.423
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.423
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.423
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.422
SPPG_05251 Spizellomyces punctatus SPPG_05251 I 0.421
estExt_Genewise1.C_10428 Volvox carteri estExt_Genewise1.C_10428 N 0.421
PK29786.1 Cannabis sativa PK29786.1 I 0.421
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.420
Bo8g081200 Brassica oleracea Bo8g081200 I 0.419
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.419
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.419
HMG-1 Pisum sativum Q41026_PEA D 0.418
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.417
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.415