MTR_8g018100 (Medicago truncatula)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 MTR_8g018100 T331386_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AET01618 Sox 206 248

Links

Other Sox family TFs
Other Medicago truncatula TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.664
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.664
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.664
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.664
Si007288m.g Setaria italica Si007288m.g I 0.664
TCM_042534 Theobroma cacao TCM_042534 I 0.618
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.616
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.615
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.603
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.601
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.592
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.582
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.577
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.567
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.565
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.560
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.543
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.526
PK14705.1 Cannabis sativa PK14705.1 I 0.525
GLYMA01G28253 Glycine max GLYMA01G28253 N 0.517
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.516
SapurV1A.0491s0160 Salix purpurea SapurV1A.0491s0160 N 0.514
TCM_018380 Theobroma cacao TCM_018380 I 0.504
Traes_1DL_ED7FDC748 Triticum aestivum Traes_1DL_ED7FDC748 N 0.498
GRMZM2G150348 Zea mays GRMZM2G150348 N 0.497
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.494
TCM_029514 Theobroma cacao TCM_029514 N 0.489
MDP0000392251 Malus domestica MDP0000392251 N 0.489
mgf012563m Mimulus guttatus mgf012563m I 0.485
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.482
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.472
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.471
OS04G0564600 Oryza sativa OS04G0564600 N 0.471
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.471
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.469
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.469
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.469
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.469
GRMZM2G144398 Zea mays GRMZM2G144398 N 0.468
BGIOSGA016928 Oryza indica BGIOSGA016928 N 0.464
OB04G28810 Oryza brachyantha OB04G28810 N 0.464
OBART04G21800 Oryza barthii OBART04G21800 N 0.464
OGLUM04G21840 Oryza glumaepatula OGLUM04G21840 N 0.464
OMERI04G18350 Oryza meridionalis OMERI04G18350 N 0.464
ONIVA04G20340 Oryza nivara ONIVA04G20340 N 0.464
OPUNC04G19550 Oryza punctata OPUNC04G19550 N 0.464
ORGLA04G0188600 Oryza glaberrima ORGLA04G0188600 N 0.464
ORUFI04G23400 Oryza rufipogon ORUFI04G23400 N 0.464
AC186524.3_FG005 Zea mays AC186524.3_FG005 N 0.463
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.453
Ca_05351 Cicer arietinum Ca_05351 I 0.453
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.453
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.451
EMIHUDRAFT_117867 Emiliania huxleyi EMIHUDRAFT_117867 I 0.446
PLICRDRAFT_179042 Plicaturopsis crispa PLICRDRAFT_179042 I 0.439
Gorai.007G078500 Gossypium raimondii Gorai.007G078500 N 0.439
HelroG187893 Helobdella robusta HelroG187893 N 0.436
Si014434m.g Setaria italica Si014434m.g N 0.436
CHD4 Echinops telfairi ENSETEG00000005912 N 0.433
CHD4 Microcebus murinus ENSMICG00000006588 N 0.433
ENSMODG00000024829 Monodelphis domestica ENSMODG00000024829 N 0.433
CHD4 Ochotona princeps ENSOPRG00000003477 N 0.433
ENSSHAG00000004107 Sarcophilus harrisii ENSSHAG00000004107 N 0.433
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.433
XP_002941963 Xenopus tropicalis XP_002941963 N 0.433
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.432
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.432
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.432
MDP0000170945 Malus domestica MDP0000170945 N 0.432
L892_g25427 Steinernema scapterisci L892_g25427 N 0.431
WUBG_06999 Wuchereria bancrofti WUBG_06999 N 0.430
CBN04053 Caenorhabditis brenneri CBN04053 N 0.430
LOAG_08062 Loa loa LOAG_08062 N 0.430
LotgiG105193 Lottia gigantea LotgiG105193 N 0.430
scaffold_600397.1 Arabidopsis lyrata scaffold_600397.1 I 0.430
ALUE_0001190701 Ascaris lumbricoides ALUE_0001190701 N 0.430
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.429
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.429
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.429
ENSCING00000023833 Ciona intestinalis ENSCING00000023833 N 0.428
PNEG_03347 Pneumocystis murina PNEG_03347 I 0.425
BGHDH14_bgh06194 Blumeria graminis BGHDH14_bgh06194 I 0.424
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.424
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.424
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.424
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.424
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.424
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.424
OB06G35870 Oryza brachyantha OB06G35870 I 0.424
OBART06G28090 Oryza barthii OBART06G28090 I 0.424
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.424
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.424
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.424
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.424
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.424
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.424
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.424
OS06G0728000 Oryza sativa OS06G0728000 I 0.424
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.424
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.424
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.424
Ca_19340 Cicer arietinum Ca_19340 I 0.424
Cla018386 Citrullus lanatus Cla018386 I 0.424
Pm002934 Prunus mume Pm002934 I 0.424
mgf016363m Mimulus guttatus mgf016363m I 0.424
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.424
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.424
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.424
PK11149.1 Cannabis sativa PK11149.1 I 0.424
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.423
EuGene.0000010567 Micromonas pusilla EuGene.0000010567 N 0.423
LotgiG126557 Lottia gigantea LotgiG126557 N 0.422
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.421
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.421
EMIHUDRAFT_434306 Emiliania huxleyi EMIHUDRAFT_434306 N 0.418
F775_27510 Aegilops tauschii F775_27510 I 0.418
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.418
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.418
TCM_021706 Theobroma cacao TCM_021706 I 0.418
Traes_5DL_BCFE39D13 Triticum aestivum Traes_5DL_BCFE39D13 N 0.418
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.418
Ca_10725 Cicer arietinum Ca_10725 I 0.418
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.418
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.418
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.418
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.416
23225_YPR052C Saccharomyces paradoxus 23225_YPR052C I 0.416
V565_033960 Rhizoctonia solani V565_033960 N 0.415