e_gw1.88.21.1 (Fragilariopsis cylindrus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 e_gw1.88.21.1 T333982_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.88.21.1 Sox 38 57

Links

Other Sox family TFs
Other Fragilariopsis cylindrus TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PPA10381 Pristionchus pacificus PPA10381 N 0.648
CaO19.9298 Candida albicans CaO19.9298 N 0.563
CaO19.1730 Candida albicans CaO19.1730 N 0.563
H101_08199 Trichophyton interdigitale H101_08199 N 0.531
Minc04648 Meloidogyne incognita Minc04648 N 0.522
Minc03634 Meloidogyne incognita Minc03634 N 0.522
ENSTNIG00000011238 Tetraodon nigroviridis ENSTNIG00000011238 N 0.515
PredSwiss_ASS2010_3146.2 Pneumocystis carinii PredSwiss_ASS2010_3146.2 N 0.502
PXEA_0001829801 Protopolystoma xenopodis PXEA_0001829801 N 0.501
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.498
SOX11 Ornithorhynchus anatinus ENSOANG00000006361 N 0.498
GLYMA02G25940 Glycine max GLYMA02G25940 N 0.486
ENSORLG00000018700 Oryzias latipes ENSORLG00000018700 N 0.473
Sjc_0095610 Schistosoma japonicum Sjc_0095610 N 0.472
RO3G_14677 Rhizopus oryzae RO3G_14677 N 0.468
Bra012244 Brassica rapa Bra012244 N 0.464
Bra016455 Brassica rapa Bra016455 N 0.464
HBP1 Echinops telfairi ENSETEG00000018542 I 0.463
ENSMEUG00000011116 Macropus eugenii ENSMEUG00000011116 I 0.463
HBP1 Sorex araneus ENSSARG00000007731 I 0.463
Hbp1 Dipodomys ordii ENSDORG00000010576 I 0.463
OESDEN_18796 Oesophagostomum dentatum OESDEN_18796 N 0.457
Ogr19131 Ophisaurus gracilis Ogr19131 N 0.453
HBP1 Homo sapiens ENSG00000105856 D 0.453
Hbp1 Mus musculus ENSMUSG00000002996 D 0.453
Ocbimv22007316m.g Octopus bimaculoides Ocbimv22007316m.g N 0.446
SPOG_05006 Schizosaccharomyces cryophilus SPOG_05006 N 0.445
GLYMA01G03580 Glycine max GLYMA01G03580 I 0.436
PEQ_0000212901 Parascaris equorum PEQ_0000212901 N 0.436
ENSGMOG00000014613 Gadus morhua ENSGMOG00000014613 N 0.434
23225_YPR052C Saccharomyces paradoxus 23225_YPR052C I 0.430
GLYMA12G31670 Glycine max GLYMA12G31670 I 0.430
orange1.1g046045m.g Citrus sinensis orange1.1g046045m.g I 0.430
Cla005767 Citrullus lanatus Cla005767 I 0.430
Eucgr.J00587 Eucalyptus grandis Eucgr.J00587 I 0.430
Ciclev10033714m.g Citrus clementina Ciclev10033714m.g I 0.430
GH23191 Drosophila grimshawi FBgn0130648 N 0.423
GPUH_0001196001 Gongylonema pulchrum GPUH_0001196001 N 0.419
GPUH_0000691201 Gongylonema pulchrum GPUH_0000691201 N 0.419