Solyc08g082070.2 (Solanum lycopersicum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Solyc08g082070.2 T332695_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.463 0.688
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.463 0.688
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc08g082070.2.1 Sox 175 239
Solyc08g082070.2.1 Sox 292 359
Solyc08g082070.2.1 Sox 420 488

Links

Other Sox family TFs
Other Solanum lycopersicum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28629.m000575 Ricinus communis 28629.m000575 N
Aquca_005_00168 Aquilegia coerulea Aquca_005_00168 N
BGIOSGA004848 Oryza indica BGIOSGA004848 N
BGIOSGA034823 Oryza indica BGIOSGA034823 N
BGIOSGA037019 Oryza indica BGIOSGA037019 N
BRADI2G55780 Brachypodium distachyon BRADI2G55780 N
cassava13394.valid.m1 Manihot esculenta cassava13394.valid.m1 N
cassava14235.m1 Manihot esculenta cassava14235.m1 N
cassava15688.m1 Manihot esculenta cassava15688.m1 N
cassava32867.m1 Manihot esculenta cassava32867.m1 N
cassava3989.m1 Manihot esculenta cassava3989.m1 N
Ca_00818 Cicer arietinum Ca_00818 N
Ca_15160 Cicer arietinum Ca_15160 N
Ciclev10029032m.g Citrus clementina Ciclev10029032m.g N
Cla008777 Citrullus lanatus Cla008777 N
Cla018691 Citrullus lanatus Cla018691 N
Cucsa.083530 Cucumis sativus Cucsa.083530 N
Cucsa.185760 Cucumis sativus Cucsa.185760 N
Cucsa.319840 Cucumis sativus Cucsa.319840 I
Eucgr.A02635 Eucalyptus grandis Eucgr.A02635 N
Eucgr.A02636 Eucalyptus grandis Eucgr.A02636 N
Eucgr.A02637 Eucalyptus grandis Eucgr.A02637 N
Eucgr.A02638 Eucalyptus grandis Eucgr.A02638 N
Eucgr.A02639 Eucalyptus grandis Eucgr.A02639 N
Eucgr.J00518 Eucalyptus grandis Eucgr.J00518 N
Eucgr.J00519 Eucalyptus grandis Eucgr.J00519 N
evm.TU.supercontig_104.98 Carica papaya evm.TU.supercontig_104.98 N
evm.TU.supercontig_195.14 Carica papaya evm.TU.supercontig_195.14 N
F775_13455 Aegilops tauschii F775_13455 N
F775_19761 Aegilops tauschii F775_19761 N
GLYMA03G35570 Glycine max GLYMA03G35570 N
GLYMA12G31150 Glycine max GLYMA12G31150 N
GLYMA13G39160 Glycine max GLYMA13G39160 N
GLYMA19G38211 Glycine max GLYMA19G38211 N
Gorai.001G122800 Gossypium raimondii Gorai.001G122800 N
Gorai.002G238300 Gossypium raimondii Gorai.002G238300 N
GRMZM2G439903 Zea mays GRMZM2G439903 N
GRMZM5G832473 Zea mays GRMZM5G832473 N
GSMUA_Achr10G04720_001 Musa acuminata GSMUA_Achr10G04720_001 N
GSMUA_Achr6G19400_001 Musa acuminata GSMUA_Achr6G19400_001 N
GSMUA_Achr8G01410_001 Musa acuminata GSMUA_Achr8G01410_001 N
GSMUA_Achr9G29750_001 Musa acuminata GSMUA_Achr9G29750_001 N
LjSGA_014778.2 Lotus japonicus LjSGA_014778.2 N
LPERR01G32790 Leersia perrieri LPERR01G32790 N
LPERR11G02950 Leersia perrieri LPERR11G02950 N
Lus10029410.g Linum usitatissimum Lus10029410.g N
MDP0000130797 Malus domestica MDP0000130797 N
MDP0000205938 Malus domestica MDP0000205938 N
MDP0000252435 Malus domestica MDP0000252435 N
MDP0000252746 Malus domestica MDP0000252746 N
MDP0000506233 Malus domestica MDP0000506233 N
MDP0000759504 Malus domestica MDP0000759504 N
mgf020234m Mimulus guttatus mgf020234m N
mgf024293m Mimulus guttatus mgf024293m N
MLOC_60153 Hordeum vulgare MLOC_60153 N
MTR_4g052620 Medicago truncatula MTR_4g052620 N
MTR_7g105170 Medicago truncatula MTR_7g105170 N
OB11G12830 Oryza brachyantha OB11G12830 N
OB12G13350 Oryza brachyantha OB12G13350 N
OBART01G38190 Oryza barthii OBART01G38190 N
OBART11G03530 Oryza barthii OBART11G03530 N
OBART12G03440 Oryza barthii OBART12G03440 N
OGLUM01G42380 Oryza glumaepatula OGLUM01G42380 N
OGLUM11G03170 Oryza glumaepatula OGLUM11G03170 N
OGLUM12G04110 Oryza glumaepatula OGLUM12G04110 N
OMERI01G35090 Oryza meridionalis OMERI01G35090 N
OMERI11G03230 Oryza meridionalis OMERI11G03230 N
ONIVA01G42870 Oryza nivara ONIVA01G42870 N
ONIVA11G03690 Oryza nivara ONIVA11G03690 N
ONIVA12G03060 Oryza nivara ONIVA12G03060 N
OPUNC01G36980 Oryza punctata OPUNC01G36980 N
OPUNC11G03220 Oryza punctata OPUNC11G03220 N
OPUNC12G03240 Oryza punctata OPUNC12G03240 N
orange1.1g023996m.g Citrus sinensis orange1.1g023996m.g N
ORGLA01G0320200 Oryza glaberrima ORGLA01G0320200 N
ORGLA11G0032800 Oryza glaberrima ORGLA11G0032800 N
ORGLA12G0033100 Oryza glaberrima ORGLA12G0033100 N
ORGLA12G0180300 Oryza glaberrima ORGLA12G0180300 N
ORUFI01G41540 Oryza rufipogon ORUFI01G41540 N
ORUFI11G03420 Oryza rufipogon ORUFI11G03420 N
OS01G0862800 Oryza sativa OS01G0862800 N
OS11G0154500 Oryza sativa OS11G0154500 N
OS12G0156100 Oryza sativa OS12G0156100 N
Pavir.Bb01366 Panicum virgatum Pavir.Bb01366 N
Pavir.Ea03745 Panicum virgatum Pavir.Ea03745 N
Pavir.Ha01768 Panicum virgatum Pavir.Ha01768 N
Pavir.Hb01808 Panicum virgatum Pavir.Hb01808 N
Pavir.J02276 Panicum virgatum Pavir.J02276 N
Pavir.J13106 Panicum virgatum Pavir.J13106 N
PGSC0003DMG400026332 Solanum tuberosum PGSC0003DMG400026332 N
PK27925.1 Cannabis sativa PK27925.1 N
PK29014.1 Cannabis sativa PK29014.1 N
Pm001403 Prunus mume Pm001403 N
Pm001404 Prunus mume Pm001404 N
POPTR_0001s22630 Populus trichocarpa POPTR_0001s22630 N
POPTR_0009s02430 Populus trichocarpa POPTR_0009s02430 N
POPTR_0016s07690 Populus trichocarpa POPTR_0016s07690 N
PRUPE_ppa010337mg Prunus persica PRUPE_ppa010337mg N
PRUPE_ppa025103mg Prunus persica PRUPE_ppa025103mg N
SapurV1A.0630s0010 Salix purpurea SapurV1A.0630s0010 N
Sb03g040720 Sorghum bicolor Sb03g040720 N
Sb05g003400 Sorghum bicolor Sb05g003400 N
Si002586m.g Setaria italica Si002586m.g N
Si025833m.g Setaria italica Si025833m.g N
Si026707m.g Setaria italica Si026707m.g N
Solyc09g010160.1 Solanum lycopersicum Solyc09g010160.1 N
Solyc11g068620.1 Solanum lycopersicum Solyc11g068620.1 N
TCM_022676 Theobroma cacao TCM_022676 N
TCM_022690 Theobroma cacao TCM_022690 N
TCM_041364 Theobroma cacao TCM_041364 N
TRAES3BF019300010CFD_g Triticum aestivum TRAES3BF019300010CFD_g N
Traes_5DL_43FC1B296 Triticum aestivum Traes_5DL_43FC1B296 N
TRIUR3_33275 Triticum urartu TRIUR3_33275 N
TRIUR3_34272 Triticum urartu TRIUR3_34272 N
VIT_08s0007g02940 Vitis vinifera VIT_08s0007g02940 N