TCM_031868 (Theobroma cacao)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 TCM_031868 T332833_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.695 0.864
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.695 0.864
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.660 0.795
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.624 0.614
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.624 0.614
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.596 0.682
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY13320 Sox 110 153
EOY13321 Sox 90 133

Links

Other Sox family TFs
Other Theobroma cacao TFs

519 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAH42217 Xenopus laevis AAH42217 I
AAI30161 Xenopus laevis AAI30161 I
AALB005039 Anopheles albimanus AALB005039 I
Aan_R001440 Calypte anna Aan_R001440 I
Aan_R014295 Calypte anna Aan_R014295 I
AARA007412 Anopheles arabiensis AARA007412 I
ACAC_0000909201 Angiostrongylus cantonensis ACAC_0000909201 I
ACHR003797 Anopheles christyi ACHR003797 I
ACOC_0000576201 Angiostrongylus costaricensis ACOC_0000576201 I
ACOM024661 Anopheles coluzzii ACOM024661 I
ACUA007180 Anopheles culicifacies ACUA007180 I
ACYPI003867 Acyrthosiphon pisum ACYPI003867 I
AEPI000589 Anopheles epiroticus AEPI000589 I
Afo_R006672 Aptenodytes forsteri Afo_R006672 I
Afo_R014263 Aptenodytes forsteri Afo_R014263 I
AFUN005441 Anopheles funestus AFUN005441 I
AGAP006108 Anopheles gambiae AGAP006108 I
Alligator_sinensis_CCG005029.1 Alligator sinensis Alligator_sinensis_CCG005029.1 I
AMEC011905 Anopheles melas AMEC011905 I
AMEM010049 Anopheles merus AMEM010049 I
AMIN009954 Anopheles minimus AMIN009954 I
AQUA011660 Anopheles quadriannulatus AQUA011660 I
ASTEI02878 Anopheles stephensi ASTEI02878 I
BGIBMGA000526 Bombyx mori BGIBMGA000526 I
BGLB002206 Biomphalaria glabrata BGLB002206 I
Bm3781 Brugia malayi Bm3781 I
Brh_R007443 Buceros rhinoceros Brh_R007443 I
Brh_R010004 Buceros rhinoceros Brh_R010004 I
CAA42778 Xenopus laevis CAA42778 I
CapteG166603 Capitella teleta CapteG166603 I
CapteG201202 Capitella teleta CapteG201202 I
CapteG48958 Capitella teleta CapteG48958 I
CapteG50376 Capitella teleta CapteG50376 I
CapteG58124 Capitella teleta CapteG58124 I
CGI_10014112 Crassostrea gigas CGI_10014112 I
CJA05984 Caenorhabditis japonica CJA05984 I
CLEC013417 Cimex lectularius CLEC013417 I
Cmyd_10003103 Chelonia mydas Cmyd_10003103 I
DAPPUDRAFT_311200 Daphnia pulex DAPPUDRAFT_311200 I
DICVIV_10680 Dictyocaulus viviparus DICVIV_10680 I
EEL_0000726801 Elaeophora elaphi EEL_0000726801 I
ENSAMEG00000000494 Ailuropoda melanoleuca ENSAMEG00000000494 I
ENSAMEG00000009393 Ailuropoda melanoleuca ENSAMEG00000009393 I
ENSAMEG00000016564 Ailuropoda melanoleuca ENSAMEG00000016564 I
ENSAMEG00000018423 Ailuropoda melanoleuca ENSAMEG00000018423 I
ENSAMXG00000007090 Astyanax mexicanus ENSAMXG00000007090 I
ENSAMXG00000014478 Astyanax mexicanus ENSAMXG00000014478 I
ENSAPLG00000003147 Anas platyrhynchos ENSAPLG00000003147 I
ENSAPLG00000004899 Anas platyrhynchos ENSAPLG00000004899 I
YBX2 Bos taurus ENSBTAG00000009126 I
YBX3 Bos taurus ENSBTAG00000009663 I
YBX1 Bos taurus ENSBTAG00000017368 I
ENSBTAP00000012735-D1 Bos grunniens ENSBTAP00000012735-D1 I
YBX1 Canis familiaris ENSCAFG00000002541 I
ENSCAFG00000005162 Canis familiaris ENSCAFG00000005162 I
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I
YBX3 Canis familiaris ENSCAFG00000013401 I
ENSCAFG00000016128 Canis familiaris ENSCAFG00000016128 I
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I
ENSCAFG00000016523 Canis familiaris ENSCAFG00000016523 I
ENSCAFG00000017286 Canis familiaris ENSCAFG00000017286 I
ENSCAFG00000030502 Canis familiaris ENSCAFG00000030502 I
YBX3 Choloepus hoffmanni ENSCHOG00000011988 I
ENSCJAG00000003155 Callithrix jacchus ENSCJAG00000003155 I
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I
YBX2 Callithrix jacchus ENSCJAG00000016581 I
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I
ENSCJAG00000021660 Callithrix jacchus ENSCJAG00000021660 I
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I
YBX2 Cavia porcellus ENSCPOG00000009543 I
YBX1 Cavia porcellus ENSCPOG00000010888 I
YBX3 Cavia porcellus ENSCPOG00000011329 I
ENSCSAG00000001168 Chlorocebus sabaeus ENSCSAG00000001168 I
ENSCSAG00000008744 Chlorocebus sabaeus ENSCSAG00000008744 I
ENSCSAG00000011857 Chlorocebus sabaeus ENSCSAG00000011857 I
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I
ybx1 Danio rerio ENSDARG00000004757 I
YBX2 Dasypus novemcinctus ENSDNOG00000013746 I
YBX1 Dasypus novemcinctus ENSDNOG00000036760 I
ENSDNOG00000040947 Dasypus novemcinctus ENSDNOG00000040947 I
ENSDNOG00000043057 Dasypus novemcinctus ENSDNOG00000043057 I
ENSDNOG00000046107 Dasypus novemcinctus ENSDNOG00000046107 N
ENSDNOG00000049716 Dasypus novemcinctus ENSDNOG00000049716 I
Ybx3 Dipodomys ordii ENSDORG00000009103 I
Ybx2 Dipodomys ordii ENSDORG00000010882 I
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I
YBX2 Equus caballus ENSECAG00000009996 I
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I
YBX3 Equus caballus ENSECAG00000013777 I
ENSECAG00000023592 Equus caballus ENSECAG00000023592 I
YBX1 Erinaceus europaeus ENSEEUG00000005657 I
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I
YBX3 Erinaceus europaeus ENSEEUG00000010415 I
YBX3 Echinops telfairi ENSETEG00000002557 I
YBX2 Echinops telfairi ENSETEG00000014271 I
ENSFALG00000003661 Ficedula albicollis ENSFALG00000003661 I
ENSFALG00000010305 Ficedula albicollis ENSFALG00000010305 I
YBX2 Felis catus ENSFCAG00000018097 I
ENSFCAG00000022604 Felis catus ENSFCAG00000022604 I
YBX3 Felis catus ENSFCAG00000027748 I
YBX2 Homo sapiens ENSG00000006047 I
YBX3 Homo sapiens ENSG00000060138 I
YBX1 Homo sapiens ENSG00000065978 D
ybx1 Gasterosteus aculeatus ENSGACG00000006447 I
YBX2 Gasterosteus aculeatus ENSGACG00000019392 I
YBX1 Gallus gallus ENSGALG00000004848 I
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I
YBX3 Gorilla gorilla ENSGGOG00000001352 I
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I
YBX2 Gorilla gorilla ENSGGOG00000007399 I
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I
ENSGMOG00000007765 Gadus morhua ENSGMOG00000007765 I
ENSGMOG00000015216 Gadus morhua ENSGMOG00000015216 I
ENSLACG00000018135 Latimeria chalumnae ENSLACG00000018135 I
ENSLAFG00000007597 Loxodonta africana ENSLAFG00000007597 I
YBX2 Loxodonta africana ENSLAFG00000014006 I
YBX3 Loxodonta africana ENSLAFG00000017247 I
ENSLOCG00000002530 Lepisosteus oculatus ENSLOCG00000002530 I
ENSLOCG00000013819 Lepisosteus oculatus ENSLOCG00000013819 I
ENSMEUG00000009893 Macropus eugenii ENSMEUG00000009893 I
YBX1 Meleagris gallopavo ENSMGAG00000006879 I
YBX3 Meleagris gallopavo ENSMGAG00000014224 I
ENSMICG00000004602 Microcebus murinus ENSMICG00000004602 I
YBX2 Microcebus murinus ENSMICG00000012453 I
ENSMICG00000014984 Microcebus murinus ENSMICG00000014984 I
YBX3 Myotis lucifugus ENSMLUG00000007476 I
ENSMLUG00000029452 Myotis lucifugus ENSMLUG00000029452 I
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I
YBX3 Macaca mulatta ENSMMUG00000022469 I
ENSMMUG00000022712 Macaca mulatta ENSMMUG00000022712 I
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I
ENSMMUP00000017257 Macaca fascicularis ENSMMUP00000017257 I
YBX1 Monodelphis domestica ENSMODG00000017214 I
YBX2 Monodelphis domestica ENSMODG00000017596 I
YBX3 Monodelphis domestica ENSMODG00000018248 I
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I
ENSMPUG00000011810 Mustela putorius furo ENSMPUG00000011810 I
ENSMPUG00000013922 Mustela putorius furo ENSMPUG00000013922 I
ENSMPUG00000018977 Mustela putorius furo ENSMPUG00000018977 I
Ybx2 Mus musculus ENSMUSG00000018554 I
Ybx1 Mus musculus ENSMUSG00000028639 I
Ybx3 Mus musculus ENSMUSG00000030189 I
ENSNLEG00000008063 Nomascus leucogenys ENSNLEG00000008063 I
ENSNLEG00000012324 Nomascus leucogenys ENSNLEG00000012324 I
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I
ENSOANG00000013173 Ornithorhynchus anatinus ENSOANG00000013173 I
ENSOARG00000011562 Ovis aries ENSOARG00000011562 I
ENSOARG00000020447 Ovis aries ENSOARG00000020447 I
ENSOARG00000020919 Ovis aries ENSOARG00000020919 I
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 I
ENSOCUG00000028047 Oryctolagus cuniculus ENSOCUG00000028047 I
YBX2 Otolemur garnettii ENSOGAG00000004392 I
YBX1 Otolemur garnettii ENSOGAG00000006784 I
YBX3 Otolemur garnettii ENSOGAG00000013245 I
ENSOGAG00000014939 Otolemur garnettii ENSOGAG00000014939 I
ENSOGAG00000024681 Otolemur garnettii ENSOGAG00000024681 I
ENSOGAG00000027853 Otolemur garnettii ENSOGAG00000027853 I
ENSOGAG00000030360 Otolemur garnettii ENSOGAG00000030360 I
ENSOGAG00000030653 Otolemur garnettii ENSOGAG00000030653 I
ENSOGAG00000032929 Otolemur garnettii ENSOGAG00000032929 I
ENSOGAG00000034677 Otolemur garnettii ENSOGAG00000034677 I
ENSONIG00000002062 Oreochromis niloticus ENSONIG00000002062 I
ENSONIG00000018954 Oreochromis niloticus ENSONIG00000018954 I
YBX2 Ochotona princeps ENSOPRG00000013773 I
ybx1 Oryzias latipes ENSORLG00000004225 I
ENSORLG00000006269 Oryzias latipes ENSORLG00000006269 I
ENSORLG00000018683 Oryzias latipes ENSORLG00000018683 I
ENSP00000007699-D1 Bos grunniens ENSP00000007699-D1 I
ENSP00000228251 Macaca fascicularis ENSP00000228251 I
ENSPANG00000005177 Papio anubis ENSPANG00000005177 I
ENSPANG00000010280 Papio anubis ENSPANG00000010280 I
ENSPANG00000013156 Papio anubis ENSPANG00000013156 I
ENSPANG00000016576 Papio anubis ENSPANG00000016576 I
ENSPANG00000019627 Papio anubis ENSPANG00000019627 I
ENSPANG00000024250 Papio anubis ENSPANG00000024250 I
YBX3 Procavia capensis ENSPCAG00000001397 I
YBX2 Procavia capensis ENSPCAG00000008019 I
ENSPFOG00000007181 Poecilia formosa ENSPFOG00000007181 I
ENSPFOG00000011441 Poecilia formosa ENSPFOG00000011441 I
ENSPPYG00000004279 Pongo abelii ENSPPYG00000004279 I
ENSPSIG00000009247 Pelodiscus sinensis ENSPSIG00000009247 I
ENSPSIG00000011017 Pelodiscus sinensis ENSPSIG00000011017 I
ENSPSIG00000012364 Pelodiscus sinensis ENSPSIG00000012364 I
YBX3 Pan troglodytes ENSPTRG00000004681 I
YBX1 Pan troglodytes ENSPTRG00000006456 I
YBX2 Pan troglodytes ENSPTRG00000008673 I
YBX1 Pteropus vampyrus ENSPVAG00000005504 I
YBX3 Pteropus vampyrus ENSPVAG00000006740 I
Ybx3 Rattus norvegicus ENSRNOG00000005480 I
Ybx2 Rattus norvegicus ENSRNOG00000017117 I
Ybx1 Rattus norvegicus ENSRNOG00000023786 I
LOC100912427 Rattus norvegicus ENSRNOG00000032902 I
YBX2 Sorex araneus ENSSARG00000000488 I
ENSSARG00000012628 Sorex araneus ENSSARG00000012628 I
ENSSHAG00000003262 Sarcophilus harrisii ENSSHAG00000003262 I
ENSSHAG00000011350 Sarcophilus harrisii ENSSHAG00000011350 I
ENSSHAG00000014452 Sarcophilus harrisii ENSSHAG00000014452 I
YBX3 Sus scrofa ENSSSCG00000000633 I
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I
YBX2 Sus scrofa ENSSSCG00000017938 I
ENSSSCG00000030357 Sus scrofa ENSSSCG00000030357 I
ENSSTOG00000000116 Ictidomys tridecemlineatus ENSSTOG00000000116 I
ENSSTOG00000002108 Ictidomys tridecemlineatus ENSSTOG00000002108 I
ENSSTOG00000008630 Ictidomys tridecemlineatus ENSSTOG00000008630 I
ENSSTOG00000022212 Ictidomys tridecemlineatus ENSSTOG00000022212 I
ENSSTOG00000026413 Ictidomys tridecemlineatus ENSSTOG00000026413 I
ENSSTOG00000027979 Ictidomys tridecemlineatus ENSSTOG00000027979 I
YBX2 Tupaia belangeri ENSTBEG00000001266 I
YBX3 Tupaia belangeri ENSTBEG00000012570 I
YBX3 Taeniopygia guttata ENSTGUG00000012047 I
YBX1 Taeniopygia guttata ENSTGUG00000017262 I
YBX2 Tetraodon nigroviridis ENSTNIG00000010139 I
ybx1 Tetraodon nigroviridis ENSTNIG00000011989 I
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I
ybx1 Takifugu rubripes ENSTRUG00000015333 I
YBX1 Tursiops truncatus ENSTTRG00000001353 I
YBX3 Tursiops truncatus ENSTTRG00000008045 I
YBX1 Vicugna pacos ENSVPAG00000000068 I
YBX3 Vicugna pacos ENSVPAG00000000876 I
YBX2 Vicugna pacos ENSVPAG00000003104 I
ENSXMAG00000015755 Xiphophorus maculatus ENSXMAG00000015755 I
ENSXMAG00000018674 Xiphophorus maculatus ENSXMAG00000018674 I
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I
yps Drosophila melanogaster FBgn0022959 I
GF10852 Drosophila ananassae FBgn0087892 I
GH16919 Drosophila grimshawi FBgn0124390 I
GI13673 Drosophila mojavensis FBgn0136428 I
GL15684 Drosophila persimilis FBgn0153288 I
GM24682 Drosophila sechellia FBgn0179545 I
GD12750 Drosophila simulans FBgn0184477 I
GJ14010 Drosophila virilis FBgn0201228 I
GK16710 Drosophila willistoni FBgn0218712 I
GE20150 Drosophila yakuba FBgn0237472 I
GA23502 Drosophila pseudoobscura FBgn0244903 I
fgenesh2_pg.scaffold_14000192 Branchiostoma floridae fgenesh2_pg.scaffold_14000192 I
GB54355 Apis mellifera GB54355 I
genemark-nMf.1.1.scaf00296-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf00296-processed-gene-0.4 I
Gfo_R007354 Geospiza fortis Gfo_R007354 I
Gfo_R009480 Geospiza fortis Gfo_R009480 I
GPUH_0001124501 Gongylonema pulchrum GPUH_0001124501 I
HMEL008461 Heliconius melpomene HMEL008461 I
HPBE_0000695301 Heligmosomoides bakeri HPBE_0000695301 I
ISCW005281 Ixodes scapularis ISCW005281 I
ISCW022953 Ixodes scapularis ISCW022953 N
KGM_01291 Danaus plexippus KGM_01291 I
L893_g29692 Steinernema glaseri L893_g29692 I
LDEC002142 Leptinotarsa decemlineata LDEC002142 I
LOAG_17966 Loa loa LOAG_17966 I
LotgiG78612 Lottia gigantea LotgiG78612 I
MCINX006244 Melitaea cinxia MCINX006244 I
MhA1_Contig2458.frz3.gene1 Meloidogyne hapla MhA1_Contig2458.frz3.gene1 I
Minc12652 Meloidogyne incognita Minc12652 I
Myotis_brandtii_YBX1_10016780 Myotis brandtii Myotis_brandtii_YBX1_10016780 I
nAv.1.0.1.g07732 Acanthocheilonema viteae nAv.1.0.1.g07732 I
NBR_0000795701 Nippostrongylus brasiliensis NBR_0000795701 I
nDi.2.2.2.g07679 Dirofilaria immitis nDi.2.2.2.g07679 I
nLs.2.1.2.g03745 Litomosoides sigmodontis nLs.2.1.2.g03745 I
nOo.2.0.1.g01690 Onchocerca ochengi nOo.2.0.1.g01690 I
Ocbimv22002282m.g Octopus bimaculoides Ocbimv22002282m.g I
Ogr02658 Ophisaurus gracilis Ogr02658 I
Ogr10632 Ophisaurus gracilis Ogr10632 I
PHUM156710 Pediculus humanus PHUM156710 I
Pvit_07856 Pogona vitticeps Pvit_07856 I
Pvit_10025 Pogona vitticeps Pvit_10025 I
RPRC001993 Rhodnius prolixus RPRC001993 I
Sakowv30002198m.g Saccoglossus kowalevskii Sakowv30002198m.g I
SBAD_0000071701 Soboliphyme baturini SBAD_0000071701 I
SPAL_0000982100 Strongyloides papillosus SPAL_0000982100 I
SPU_003107 Strongylocentrotus purpuratus SPU_003107 I
SSTP_0000685800 Strongyloides stercoralis SSTP_0000685800 I
SVE_1573400 Strongyloides venezuelensis SVE_1573400 I
T265_06248 Opisthorchis viverrini T265_06248 I
Tal_R011198 Tyto alba Tal_R011198 I
TELCIR_06115 Teladorsagia circumcincta TELCIR_06115 I
TRE_0001884901 Trichobilharzia regenti TRE_0001884901 I
cey-1 Caenorhabditis elegans WBGene00000472 D
WBGene00247949 Onchocerca volvulus WBGene00247949 I
WUBG_03960 Wuchereria bancrofti WUBG_03960 I
ybx3 Xenopus tropicalis XB-GENE-1007558 I
ybx3.S Xenopus laevis XB-GENE-1007563 I
ybx1 Xenopus tropicalis XB-GENE-480746 I
ybx2 Xenopus tropicalis XB-GENE-5798907 I
ybx2.L Xenopus laevis XB-GENE-6252609 I
ybx2.S Xenopus laevis XB-GENE-6254213 I
ybx1.S Xenopus laevis XB-GENE-865405 I
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I
YQE_07192 Dendroctonus ponderosae YQE_07192 I