fgenesh2_pg.scaffold_14000192 (Branchiostoma floridae)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 fgenesh2_pg.scaffold_14000192 T165394_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		0.757 0.757
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		0.757 0.757
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		0.757 0.757
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		0.757 0.757
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.703 0.703
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_14000192 CSD 107 143

Links

Other CSD family TFs
Other Branchiostoma floridae TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.811
YBX1 Dasypus novemcinctus ENSDNOG00000036760 I 0.784
YBX1 Homo sapiens ENSG00000065978 D 0.784
ENSGMOG00000015216 Gadus morhua ENSGMOG00000015216 I 0.784
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.784
ENSAMEG00000000494 Ailuropoda melanoleuca ENSAMEG00000000494 I 0.757
ENSAMEG00000009393 Ailuropoda melanoleuca ENSAMEG00000009393 I 0.757
ENSAMEG00000016564 Ailuropoda melanoleuca ENSAMEG00000016564 I 0.757
ENSAMXG00000007090 Astyanax mexicanus ENSAMXG00000007090 I 0.757
ENSAMXG00000014478 Astyanax mexicanus ENSAMXG00000014478 I 0.757
ENSAPLG00000003147 Anas platyrhynchos ENSAPLG00000003147 I 0.757
YBX2 Bos taurus ENSBTAG00000009126 I 0.757
YBX3 Bos taurus ENSBTAG00000009663 I 0.757
YBX1 Bos taurus ENSBTAG00000017368 I 0.757
YBX1 Canis familiaris ENSCAFG00000002541 I 0.757
YBX3 Canis familiaris ENSCAFG00000013401 I 0.757
ENSCAFG00000016128 Canis familiaris ENSCAFG00000016128 I 0.757
ENSCAFG00000017286 Canis familiaris ENSCAFG00000017286 I 0.757
YBX3 Choloepus hoffmanni ENSCHOG00000011988 I 0.757
ENSCJAG00000003155 Callithrix jacchus ENSCJAG00000003155 I 0.757
YBX2 Callithrix jacchus ENSCJAG00000016581 I 0.757
ENSCJAG00000021660 Callithrix jacchus ENSCJAG00000021660 I 0.757
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.757
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.757
YBX1 Cavia porcellus ENSCPOG00000010888 I 0.757
YBX3 Cavia porcellus ENSCPOG00000011329 I 0.757
ENSCSAG00000008744 Chlorocebus sabaeus ENSCSAG00000008744 I 0.757
ENSCSAG00000011857 Chlorocebus sabaeus ENSCSAG00000011857 I 0.757
ybx1 Danio rerio ENSDARG00000004757 I 0.757
YBX2 Dasypus novemcinctus ENSDNOG00000013746 I 0.757
Ybx3 Dipodomys ordii ENSDORG00000009103 I 0.757
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.757
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.757
YBX2 Equus caballus ENSECAG00000009996 I 0.757
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.757
YBX3 Equus caballus ENSECAG00000013777 I 0.757
ENSECAG00000023592 Equus caballus ENSECAG00000023592 I 0.757
YBX1 Erinaceus europaeus ENSEEUG00000005657 I 0.757
YBX3 Erinaceus europaeus ENSEEUG00000010415 I 0.757
YBX3 Echinops telfairi ENSETEG00000002557 I 0.757
YBX2 Echinops telfairi ENSETEG00000014271 I 0.757
ENSFALG00000003661 Ficedula albicollis ENSFALG00000003661 I 0.757
YBX2 Felis catus ENSFCAG00000018097 I 0.757
YBX3 Felis catus ENSFCAG00000027748 I 0.757
YBX3 Homo sapiens ENSG00000060138 I 0.757
ybx1 Gasterosteus aculeatus ENSGACG00000006447 I 0.757
YBX1 Gallus gallus ENSGALG00000004848 I 0.757
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.757
YBX3 Gorilla gorilla ENSGGOG00000001352 I 0.757
ENSLACG00000018135 Latimeria chalumnae ENSLACG00000018135 I 0.757
ENSLAFG00000007597 Loxodonta africana ENSLAFG00000007597 I 0.757
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.757
YBX3 Loxodonta africana ENSLAFG00000017247 I 0.757
ENSLOCG00000002530 Lepisosteus oculatus ENSLOCG00000002530 I 0.757
ENSLOCG00000013819 Lepisosteus oculatus ENSLOCG00000013819 I 0.757
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.757
YBX3 Meleagris gallopavo ENSMGAG00000014224 I 0.757
ENSMICG00000004602 Microcebus murinus ENSMICG00000004602 I 0.757
ENSMICG00000014984 Microcebus murinus ENSMICG00000014984 I 0.757
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.757
YBX3 Macaca mulatta ENSMMUG00000022469 I 0.757
ENSMMUG00000022712 Macaca mulatta ENSMMUG00000022712 I 0.757
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.757
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.757
YBX3 Monodelphis domestica ENSMODG00000018248 I 0.757
Ybx2 Mus musculus ENSMUSG00000018554 I 0.757
Ybx1 Mus musculus ENSMUSG00000028639 I 0.757
Ybx3 Mus musculus ENSMUSG00000030189 I 0.757
ENSNLEG00000008063 Nomascus leucogenys ENSNLEG00000008063 I 0.757
ENSNLEG00000012324 Nomascus leucogenys ENSNLEG00000012324 I 0.757
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.757
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.757
ENSOARG00000011562 Ovis aries ENSOARG00000011562 I 0.757
ENSOARG00000020447 Ovis aries ENSOARG00000020447 I 0.757
ENSOARG00000020919 Ovis aries ENSOARG00000020919 I 0.757
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.757
YBX1 Otolemur garnettii ENSOGAG00000006784 I 0.757
ENSONIG00000002062 Oreochromis niloticus ENSONIG00000002062 I 0.757
ENSONIG00000018954 Oreochromis niloticus ENSONIG00000018954 I 0.757
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.757
ybx1 Oryzias latipes ENSORLG00000004225 I 0.757
ENSPANG00000010280 Papio anubis ENSPANG00000010280 I 0.757
ENSPANG00000013156 Papio anubis ENSPANG00000013156 I 0.757
ENSPANG00000016576 Papio anubis ENSPANG00000016576 I 0.757
ENSPANG00000024250 Papio anubis ENSPANG00000024250 I 0.757
YBX2 Procavia capensis ENSPCAG00000008019 I 0.757
ENSPFOG00000011441 Poecilia formosa ENSPFOG00000011441 I 0.757
ENSPPYG00000004279 Pongo abelii ENSPPYG00000004279 I 0.757
ENSPSIG00000009247 Pelodiscus sinensis ENSPSIG00000009247 I 0.757
ENSPSIG00000011017 Pelodiscus sinensis ENSPSIG00000011017 I 0.757
ENSPSIG00000012364 Pelodiscus sinensis ENSPSIG00000012364 I 0.757
YBX1 Pan troglodytes ENSPTRG00000006456 I 0.757
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.757
YBX3 Pteropus vampyrus ENSPVAG00000006740 I 0.757
Ybx3 Rattus norvegicus ENSRNOG00000005480 I 0.757
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.757
Ybx1 Rattus norvegicus ENSRNOG00000023786 I 0.757
YBX2 Sorex araneus ENSSARG00000000488 I 0.757
ENSSHAG00000003262 Sarcophilus harrisii ENSSHAG00000003262 I 0.757
ENSSHAG00000014452 Sarcophilus harrisii ENSSHAG00000014452 I 0.757
YBX3 Sus scrofa ENSSSCG00000000633 I 0.757
YBX2 Sus scrofa ENSSSCG00000017938 I 0.757
ENSSSCG00000030357 Sus scrofa ENSSSCG00000030357 I 0.757
ENSSTOG00000008630 Ictidomys tridecemlineatus ENSSTOG00000008630 I 0.757
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.757
YBX3 Tupaia belangeri ENSTBEG00000012570 I 0.757
YBX3 Taeniopygia guttata ENSTGUG00000012047 I 0.757
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.757
ybx1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.757
ybx1 Takifugu rubripes ENSTRUG00000015333 I 0.757
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.757
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.757
YBX3 Vicugna pacos ENSVPAG00000000876 I 0.757
ENSXMAG00000018674 Xiphophorus maculatus ENSXMAG00000018674 I 0.757
SPU_003107 Strongylocentrotus purpuratus SPU_003107 I 0.757
Aan_R001440 Calypte anna Aan_R001440 I 0.757
Aan_R014295 Calypte anna Aan_R014295 I 0.757
Afo_R014263 Aptenodytes forsteri Afo_R014263 I 0.757
Alligator_sinensis_CCG005029.1 Alligator sinensis Alligator_sinensis_CCG005029.1 I 0.757
Brh_R007443 Buceros rhinoceros Brh_R007443 I 0.757
ENSBTAP00000012735-D1 Bos grunniens ENSBTAP00000012735-D1 I 0.757
ENSP00000007699-D1 Bos grunniens ENSP00000007699-D1 I 0.757
ENSP00000228251 Macaca fascicularis ENSP00000228251 I 0.757
Gfo_R007354 Geospiza fortis Gfo_R007354 I 0.757
Ogr10632 Ophisaurus gracilis Ogr10632 I 0.757
Pvit_10025 Pogona vitticeps Pvit_10025 I 0.757
AAH42217 Xenopus laevis AAH42217 I 0.757
AAI30161 Xenopus laevis AAI30161 I 0.757
CAA42778 Xenopus laevis CAA42778 I 0.757
ybx1 Xenopus tropicalis XB-GENE-480746 I 0.757
ybx2 Xenopus tropicalis XB-GENE-5798907 I 0.757
ybx2.L Xenopus laevis XB-GENE-6252609 I 0.757
ybx1.S Xenopus laevis XB-GENE-865405 I 0.757
ybx3.S Xenopus laevis XB-GENE-1007563 I 0.744
CapteG166603 Capitella teleta CapteG166603 I 0.730
ENSOGAG00000034677 Otolemur garnettii ENSOGAG00000034677 I 0.730
ENSPANG00000019627 Papio anubis ENSPANG00000019627 I 0.730
YBX3 Procavia capensis ENSPCAG00000001397 I 0.730
PHUM156710 Pediculus humanus PHUM156710 I 0.730
Sakowv30002198m.g Saccoglossus kowalevskii Sakowv30002198m.g I 0.730
LCUP004743 Lucilia cuprina LCUP004743 I 0.730
ybx2.S Xenopus laevis XB-GENE-6254213 I 0.730
BGLB002206 Biomphalaria glabrata BGLB002206 I 0.730
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.703
ENSAPLG00000004899 Anas platyrhynchos ENSAPLG00000004899 I 0.703
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.703
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.703
ENSOGAG00000027853 Otolemur garnettii ENSOGAG00000027853 I 0.703
ENSOGAG00000032929 Otolemur garnettii ENSOGAG00000032929 I 0.703
ENSPANG00000005177 Papio anubis ENSPANG00000005177 I 0.703
LOC100912427 Rattus norvegicus ENSRNOG00000032902 I 0.703
GF10852 Drosophila ananassae FBgn0087892 I 0.703
GL15684 Drosophila persimilis FBgn0153288 I 0.703
GK16710 Drosophila willistoni FBgn0218712 I 0.703
GA23502 Drosophila pseudoobscura FBgn0244903 I 0.703
GB54355 Apis mellifera GB54355 I 0.703
HMEL008461 Heliconius melpomene HMEL008461 I 0.703
KGM_01291 Danaus plexippus KGM_01291 I 0.703
LotgiG78612 Lottia gigantea LotgiG78612 I 0.703
MCINX006244 Melitaea cinxia MCINX006244 I 0.703
TC013925 Tribolium castaneum TC013925 I 0.703
YQE_07192 Dendroctonus ponderosae YQE_07192 I 0.703
Ocbimv22002282m.g Octopus bimaculoides Ocbimv22002282m.g I 0.703
LDEC002142 Leptinotarsa decemlineata LDEC002142 I 0.703
MDOA013639 Musca domestica MDOA013639 I 0.703