Ca_12379 (Cicer arietinum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Ca_12379 T333597_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.706 0.837
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.706 0.837
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.689 0.767
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.659 0.721
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.659 0.721
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.589 0.628
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_12379 Sox 122 164

Links

Other Sox family TFs
Other Cicer arietinum TFs

521 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL000181 Aedes aegypti AAEL000181 N 0.000
AALB009551 Anopheles albimanus AALB009551 N 0.000
AARA006496 Anopheles arabiensis AARA006496 N 0.000
AATE004647 Anopheles atroparvus AATE004647 N 0.000
ACAC_0000973801 Angiostrongylus cantonensis ACAC_0000973801 N 0.000
ACEP25803 Atta cephalotes ACEP25803 N 0.000
ACHR006211 Anopheles christyi ACHR006211 N 0.000
ACOM033657 Anopheles coluzzii ACOM033657 N 0.000
ACUA025632 Anopheles culicifacies ACUA025632 N 0.000
ACYPI001480 Acyrthosiphon pisum ACYPI001480 N 0.000
ADAC005840 Anopheles darlingi ADAC005840 N 0.000
ADIR010123 Anopheles dirus ADIR010123 N 0.000
AEPI009418 Anopheles epiroticus AEPI009418 N 0.000
AFAF001135 Anopheles farauti AFAF001135 N 0.000
AFUN001272 Anopheles funestus AFUN001272 N 0.000
AGAP001099 Anopheles gambiae AGAP001099 N 0.000
AMAM022417 Anopheles maculatus AMAM022417 N 0.000
AMEC012325 Anopheles melas AMEC012325 N 0.000
AMEM003228 Anopheles merus AMEM003228 N 0.000
AMIN002364 Anopheles minimus AMIN002364 N 0.000
ANCCAN_09463 Ancylostoma caninum ANCCAN_09463 N 0.000
ANCCEY_15064 Ancylostoma ceylanicum ANCCEY_15064 N 0.000
ANCCEY_15918 Ancylostoma ceylanicum ANCCEY_15918 N 0.000
ANCDUO_06783 Ancylostoma duodenale ANCDUO_06783 N 0.000
AQUA001810 Anopheles quadriannulatus AQUA001810 N 0.000
ASIS018375 Anopheles sinensis ASIS018375 N 0.000
ASTEI10740 Anopheles stephensi ASTEI10740 N 0.000
BGIBMGA010711 Bombyx mori BGIBMGA010711 N 0.000
CBG11867 Caenorhabditis briggsae CBG11867 N 0.000
CBN07735 Caenorhabditis brenneri CBN07735 N 0.000
CBN31697 Caenorhabditis brenneri CBN31697 N 0.000
Cflo_01038--XP_625055.2_APIME Camponotus floridanus Cflo_01038--XP_625055.2_APIME N 0.000
CGI_10018256 Crassostrea gigas CGI_10018256 N 0.000
CJA03316 Caenorhabditis japonica CJA03316 N 0.000
CJA30740 Caenorhabditis japonica CJA30740 N 0.000
CLEC008450 Cimex lectularius CLEC008450 N 0.000
CpipJ_CPIJ007271 Culex pipiens CpipJ_CPIJ007271 N 0.000
CRE14258 Caenorhabditis remanei CRE14258 N 0.000
DAPPUDRAFT_304382 Daphnia pulex DAPPUDRAFT_304382 N 0.000
DICVIV_00270 Dictyocaulus viviparus DICVIV_00270 N 0.000
ENSAMXG00000020941 Astyanax mexicanus ENSAMXG00000020941 N 0.000
ENSGMOG00000008081 Gadus morhua ENSGMOG00000008081 N 0.000
ENSGMOG00000013406 Gadus morhua ENSGMOG00000013406 N 0.000
ENSMMUP00000034886 Macaca fascicularis ENSMMUP00000034886 N 0.000
TOX2 Sorex araneus ENSSARG00000001080 N 0.000
ENSSSCG00000023554 Sus scrofa ENSSSCG00000023554 N 0.000
ENSTGUG00000003811 Taeniopygia guttata ENSTGUG00000003811 N 0.000
ENSTGUG00000014902 Taeniopygia guttata ENSTGUG00000014902 N 0.000
tox2 Takifugu rubripes ENSTRUG00000013848 N 0.000
polybromo Drosophila melanogaster FBgn0039227 N 0.000
GA10956 Drosophila pseudoobscura FBgn0071012 N 0.000
GF23180 Drosophila ananassae FBgn0100174 N 0.000
GG12321 Drosophila erecta FBgn0104611 N 0.000
GH18462 Drosophila grimshawi FBgn0125929 N 0.000
GI24041 Drosophila mojavensis FBgn0146764 N 0.000
GL13862 Drosophila persimilis FBgn0151467 N 0.000
GM22062 Drosophila sechellia FBgn0176933 N 0.000
GJ23670 Drosophila virilis FBgn0210767 N 0.000
GK13168 Drosophila willistoni FBgn0215177 N 0.000
GE10775 Drosophila yakuba FBgn0228617 N 0.000
GB42921 Apis mellifera GB42921 N 0.000
HCOI00076900 Haemonchus contortus HCOI00076900 N 0.000
HCOI01215700 Haemonchus contortus HCOI01215700 N 0.000
HMEL006186 Heliconius melpomene HMEL006186 N 0.000
Hsal_02676--XP_625055.2_APIME Harpegnathos saltator Hsal_02676--XP_625055.2_APIME N 0.000
Hsal_06265--XP_624018.2_APIME Harpegnathos saltator Hsal_06265--XP_624018.2_APIME N 0.000
ISCW005293 Ixodes scapularis ISCW005293 N 0.000
KGM_06850 Danaus plexippus KGM_06850 N 0.000
L798_12146 Zootermopsis nevadensis L798_12146 N 0.000
L889_g13125 Steinernema feltiae L889_g13125 N 0.000
L898_g14011 Steinernema monticolum L898_g14011 N 0.000
LCUP007789 Lucilia cuprina LCUP007789 N 0.000
LDEC007066 Leptinotarsa decemlineata LDEC007066 N 0.000
LLOJ004028 Lutzomyia longipalpis LLOJ004028 N 0.000
LotgiG176647 Lottia gigantea LotgiG176647 N 0.000
MDOA008474 Musca domestica MDOA008474 N 0.000
MESCA007902 Megaselia scalaris MESCA007902 N 0.000
MhA1_Contig232.frz3.gene23 Meloidogyne hapla MhA1_Contig232.frz3.gene23 N 0.000
Minc06622 Meloidogyne incognita Minc06622 N 0.000
NECAME_01599 Necator americanus NECAME_01599 N 0.000
OESDEN_01314 Oesophagostomum dentatum OESDEN_01314 N 0.000
PHUM244090 Pediculus humanus PHUM244090 N 0.000
PPAI002532 Phlebotomus papatasi PPAI002532 N 0.000
PTRK_0001310900 Parastrongyloides trichosuri PTRK_0001310900 N 0.000
RPRC014309 Rhodnius prolixus RPRC014309 N 0.000
RSKR_0000607700 Rhabditophanes kr3021 RSKR_0000607700 N 0.000
RSKR_0000620800 Rhabditophanes kr3021 RSKR_0000620800 N 0.000
scaffold517-EXSNAP2012.7 Pristionchus exspectatus scaffold517-EXSNAP2012.7 N 0.000
SINV16486 Solenopsis invicta SINV16486 N 0.000
SMAR009325 Strigamia maritima SMAR009325 N 0.000
SPAL_0001274100 Strongyloides papillosus SPAL_0001274100 N 0.000
SSTP_0000878000 Strongyloides stercoralis SSTP_0000878000 N 0.000
SSTP_0001127200 Strongyloides stercoralis SSTP_0001127200 N 0.000
SVE_0827400 Strongyloides venezuelensis SVE_0827400 N 0.000
SVUK_0000363901 Strongylus vulgaris SVUK_0000363901 N 0.000
TC000618 Tribolium castaneum TC000618 N 0.000
TELCIR_16246 Teladorsagia circumcincta TELCIR_16246 N 0.000
tetur21g01330 Tetranychus urticae tetur21g01330 N 0.000
pbrm-1 Caenorhabditis elegans WBGene00007042 N 0.000
YQE_05481 Dendroctonus ponderosae YQE_05481 N 0.000