Gorai.007G025500 (Gossypium raimondii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Gorai.007G025500 T334542_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.466 0.662
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.466 0.662
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G025500.1 Sox 170 238
Gorai.007G025500.1 Sox 287 355
Gorai.007G025500.1 Sox 414 482
Gorai.007G025500.2 Sox 170 238
Gorai.007G025500.2 Sox 287 355
Gorai.007G025500.2 Sox 414 456
Gorai.007G025500.3 Sox 9 94
Gorai.007G025500.3 Sox 126 194
Gorai.007G025500.3 Sox 253 321

Links

Other Sox family TFs
Other Gossypium raimondii TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000464501 Angiostrongylus cantonensis ACAC_0000464501 N 0.000
CBN14148 Caenorhabditis brenneri CBN14148 N 0.000
CBN26172 Caenorhabditis brenneri CBN26172 N 0.000
HCOI00314300 Haemonchus contortus HCOI00314300 N 0.000
L596_g25846 Steinernema carpocapsae L596_g25846 N 0.000
TELCIR_12384 Teladorsagia circumcincta TELCIR_12384 N 0.000
npax-3 Caenorhabditis elegans WBGene00011257 N 0.000