Gorai.007G025500 (Gossypium raimondii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Gorai.007G025500 T334542_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.466 0.662
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.466 0.662
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G025500.1 Sox 170 238
Gorai.007G025500.1 Sox 287 355
Gorai.007G025500.1 Sox 414 482
Gorai.007G025500.2 Sox 170 238
Gorai.007G025500.2 Sox 287 355
Gorai.007G025500.2 Sox 414 456
Gorai.007G025500.3 Sox 9 94
Gorai.007G025500.3 Sox 126 194
Gorai.007G025500.3 Sox 253 321

Links

Other Sox family TFs
Other Gossypium raimondii TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_016416 Theobroma cacao TCM_016416 I 0.639
30190.m010807 Ricinus communis 30190.m010807 I 0.626
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.601
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.594
Cla011101 Citrullus lanatus Cla011101 I 0.593
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.593
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.589
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.589
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.578
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.576
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.576
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.575
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.562
Pm024077 Prunus mume Pm024077 I 0.562
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.562
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.561
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.546
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.544
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.537
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.526
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.520
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.517
mgf015439m Mimulus guttatus mgf015439m I 0.508
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.505
GSMUA_Achr10G14500_001 Musa acuminata GSMUA_Achr10G14500_001 N 0.500
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.494
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.494
HMGB6 Arabidopsis thaliana AT4G23800 I 0.493
PK10992.1 Cannabis sativa PK10992.1 I 0.493
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.487
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.486
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.485
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.485
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.484
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.479
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.478
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.477
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.476
Si017040m.g Setaria italica Si017040m.g I 0.472
Bo1g037180 Brassica oleracea Bo1g037180 I 0.471
Bra013731 Brassica rapa Bra013731 I 0.471
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.470
HMGB13 Arabidopsis thaliana AT4G11080 D 0.466
Bra035256 Brassica rapa Bra035256 I 0.461
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.460
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.454
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.451
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.451
MDP0000268093 Malus domestica MDP0000268093 I 0.450
OB02G19930 Oryza brachyantha OB02G19930 N 0.443
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.438
F775_10696 Aegilops tauschii F775_10696 N 0.436
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.435
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.431
Lus10033951.g Linum usitatissimum Lus10033951.g N 0.425
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.420
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.418