PGSC0003DMG400012298 (Solanum tuberosum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PGSC0003DMG400012298 T331848_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.461 0.678
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.461 0.678
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400032048 Sox 176 240
PGSC0003DMT400032048 Sox 293 360
PGSC0003DMT400032048 Sox 421 489
PGSC0003DMT400032049 Sox 176 240
PGSC0003DMT400032049 Sox 293 360
PGSC0003DMT400032049 Sox 421 462

Links

Other Sox family TFs
Other Solanum tuberosum TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.730
30190.m010807 Ricinus communis 30190.m010807 I 0.605
Cla011101 Citrullus lanatus Cla011101 I 0.603
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.594
TCM_016416 Theobroma cacao TCM_016416 I 0.581
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.559
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.554
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.549
mgf015439m Mimulus guttatus mgf015439m I 0.534
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.529
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.523
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.519
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.515
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.513
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.511
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.507
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.501
Pm024077 Prunus mume Pm024077 I 0.501
PK10992.1 Cannabis sativa PK10992.1 I 0.493
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.486
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.486
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.481
Bo1g037180 Brassica oleracea Bo1g037180 I 0.472
Bra013731 Brassica rapa Bra013731 I 0.472
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.471
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.468
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.468
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.466
HMGB13 Arabidopsis thaliana AT4G11080 D 0.461
MDP0000268093 Malus domestica MDP0000268093 I 0.459
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.459
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.454
GSMUA_Achr10G14500_001 Musa acuminata GSMUA_Achr10G14500_001 N 0.451
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.449
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.448
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.448
HMGB6 Arabidopsis thaliana AT4G23800 I 0.445
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.444
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.441
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.441
Si017040m.g Setaria italica Si017040m.g I 0.437
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.437
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.437
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.437
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.429
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.427
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.427
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.421
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.420
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.416