Sb04g009610 (Sorghum bicolor)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Sb04g009610 T332415_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.446 0.614
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.446 0.614
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb04g009610.1 Sox 165 230
Sb04g009610.1 Sox 288 354
Sb04g009610.1 Sox 413 481

Links

Other Sox family TFs
Other Sorghum bicolor TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.718
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.716
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.708
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.681
Si017040m.g Setaria italica Si017040m.g I 0.665
OB02G19930 Oryza brachyantha OB02G19930 N 0.617
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.614
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.605
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.598
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.580
OBART02G11160 Oryza barthii OBART02G11160 I 0.580
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.580
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.580
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.580
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.580
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.570
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.567
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.534
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.532
mgf015439m Mimulus guttatus mgf015439m I 0.523
F775_10696 Aegilops tauschii F775_10696 N 0.519
Cla011101 Citrullus lanatus Cla011101 I 0.496
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.494
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.491
TCM_016416 Theobroma cacao TCM_016416 I 0.486
30190.m010807 Ricinus communis 30190.m010807 I 0.478
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.472
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.469
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.464
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.461
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.461
Pm024077 Prunus mume Pm024077 I 0.461
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.453
HMGB13 Arabidopsis thaliana AT4G11080 D 0.446
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.446
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.444
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.443
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.442
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.438
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.438
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.438
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.436
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.435
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.434
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.433
PK10992.1 Cannabis sativa PK10992.1 I 0.432
HMGB6 Arabidopsis thaliana AT4G23800 I 0.427
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.425
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.424
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.424
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.424
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.418
Bra035256 Brassica rapa Bra035256 I 0.417
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.417
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.417