ONIVA02G12490 (Oryza nivara)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ONIVA02G12490 T331642_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.423 0.584
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.423 0.584
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA02G12490.1 Sox 157 222
ONIVA02G12490.1 Sox 284 350
ONIVA02G12490.1 Sox 413 481

Links

Other Sox family TFs
Other Oryza nivara TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.741
OBART02G11160 Oryza barthii OBART02G11160 I 0.741
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.741
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.741
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.732
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.729
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.709
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.638
OB02G19930 Oryza brachyantha OB02G19930 N 0.628
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.609
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.602
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.581
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.580
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.567
Si017040m.g Setaria italica Si017040m.g I 0.565
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.559
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.547
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.497
mgf015439m Mimulus guttatus mgf015439m I 0.485
F775_10696 Aegilops tauschii F775_10696 N 0.464
OS02G0258200 Oryza sativa OS02G0258200 N 0.463
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.447
Pm024077 Prunus mume Pm024077 I 0.447
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.441
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.435
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.434
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.426
HMGB13 Arabidopsis thaliana AT4G11080 D 0.423
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.420
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.420
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.418
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.418
TCM_016416 Theobroma cacao TCM_016416 I 0.416