BRADI3G09690 (Brachypodium distachyon)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 BRADI3G09690 T326729_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.465 0.604
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.465 0.604
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G09690.1 Sox 209 274
BRADI3G09690.1 Sox 329 395
BRADI3G09690.1 Sox 454 522

Links

Other Sox family TFs
Other Brachypodium distachyon TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.703
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.681
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.671
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.664
Si017040m.g Setaria italica Si017040m.g I 0.655
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.627
OB02G19930 Oryza brachyantha OB02G19930 N 0.618
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.614
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.609
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.609
OBART02G11160 Oryza barthii OBART02G11160 I 0.609
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.609
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.609
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.609
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.609
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.600
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.596
mgf015439m Mimulus guttatus mgf015439m I 0.550
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.524
Cla011101 Citrullus lanatus Cla011101 I 0.511
TCM_016416 Theobroma cacao TCM_016416 I 0.507
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.505
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.503
F775_10696 Aegilops tauschii F775_10696 N 0.502
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.492
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.488
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.486
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.475
30190.m010807 Ricinus communis 30190.m010807 I 0.474
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.473
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.467
Pm024077 Prunus mume Pm024077 I 0.467
HMGB13 Arabidopsis thaliana AT4G11080 D 0.465
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.464
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.462
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.457
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.456
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.453
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.453
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.453
HMGB6 Arabidopsis thaliana AT4G23800 I 0.452
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.450
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.446
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.445
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.445
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.445
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.445
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.444
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.443
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.439
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.436
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.435
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.433
Bo1g037180 Brassica oleracea Bo1g037180 I 0.432
Bra013731 Brassica rapa Bra013731 I 0.432
PK10992.1 Cannabis sativa PK10992.1 I 0.432
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.428
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.420