BGIOSGA006746 (Oryza indica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 BGIOSGA006746 T326586_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.423 0.584
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.423 0.584
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA006746-PA Sox 157 222
BGIOSGA006746-PA Sox 285 351
BGIOSGA006746-PA Sox 414 482

Links

Other Sox family TFs
Other Oryza indica TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.741
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.741
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.741
OBART02G11160 Oryza barthii OBART02G11160 I 0.741
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.732
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.729
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.709
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.638
OB02G19930 Oryza brachyantha OB02G19930 N 0.628
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.609
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.602
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.581
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.580
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.567
Si017040m.g Setaria italica Si017040m.g I 0.565
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.559
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.547
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.497
mgf015439m Mimulus guttatus mgf015439m I 0.485
F775_10696 Aegilops tauschii F775_10696 N 0.464
OS02G0258200 Oryza sativa OS02G0258200 N 0.463
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.447
Pm024077 Prunus mume Pm024077 I 0.447
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.441
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.435
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.434
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.426
HMGB13 Arabidopsis thaliana AT4G11080 D 0.423
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.420
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.420
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.418
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.418
TCM_016416 Theobroma cacao TCM_016416 I 0.416