mgf015439m (Mimulus guttatus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 mgf015439m T334297_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.506 0.670
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.506 0.670
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mgf015439m Sox 179 245
mgf015439m Sox 296 362
mgf015439m Sox 423 491

Links

Other Sox family TFs
Other Mimulus guttatus TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.550
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.545
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.540
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.534
TCM_016416 Theobroma cacao TCM_016416 I 0.534
30190.m010807 Ricinus communis 30190.m010807 I 0.534
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.531
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.525
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.523
Cla011101 Citrullus lanatus Cla011101 I 0.520
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.516
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.513
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.510
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.509
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.508
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.508
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.508
HMGB13 Arabidopsis thaliana AT4G11080 D 0.506
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.501
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.496
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.496
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.493
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.492
Si017040m.g Setaria italica Si017040m.g I 0.492
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.489
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.487
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.487
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.487
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.485
OBART02G11160 Oryza barthii OBART02G11160 I 0.485
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.485
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.485
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.485
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.483
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.482
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.481
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.481
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.480
Pm024077 Prunus mume Pm024077 I 0.480
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.479
PK10992.1 Cannabis sativa PK10992.1 I 0.478
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.474
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.472
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.470
OB02G19930 Oryza brachyantha OB02G19930 N 0.468
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.466
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.465
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.464
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.461
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.458
HMGB6 Arabidopsis thaliana AT4G23800 I 0.457
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.456
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.451
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.444
Bra035256 Brassica rapa Bra035256 I 0.442
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.442
Bo1g037180 Brassica oleracea Bo1g037180 I 0.438
Bra013731 Brassica rapa Bra013731 I 0.438
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.436
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.431
MDP0000268093 Malus domestica MDP0000268093 I 0.422