GRMZM2G060253 (Zea mays)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GRMZM2G060253 T330323_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.421 0.599
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.421 0.599
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G060253_P01 Sox 165 230
GRMZM2G060253_P01 Sox 287 353
GRMZM2G060253_P01 Sox 412 480

Links

Other Sox family TFs
Other Zea mays TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.716
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.697
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.687
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.664
Si017040m.g Setaria italica Si017040m.g I 0.644
OB02G19930 Oryza brachyantha OB02G19930 N 0.606
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.597
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.592
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.585
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.567
OBART02G11160 Oryza barthii OBART02G11160 I 0.567
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.567
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.567
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.567
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.567
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.555
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.553
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.532
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.508
mgf015439m Mimulus guttatus mgf015439m I 0.508
F775_10696 Aegilops tauschii F775_10696 N 0.504
Cla011101 Citrullus lanatus Cla011101 I 0.504
TCM_016416 Theobroma cacao TCM_016416 I 0.496
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.483
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.479
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.474
30190.m010807 Ricinus communis 30190.m010807 I 0.461
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.460
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.452
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.448
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.447
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.438
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.437
Pm024077 Prunus mume Pm024077 I 0.437
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.436
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.429
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.429
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.427
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.427
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.423
HMGB13 Arabidopsis thaliana AT4G11080 D 0.421
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.420
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.419
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.416