Lus10001909.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10001909.g T334557_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.537 0.681
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.537 0.681
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10001909 Sox 174 241
Lus10001909 Sox 292 358
Lus10001909 Sox 420 488

Links

Other Sox family TFs
Other Linum usitatissimum TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.698
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.586
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.586
Cla011101 Citrullus lanatus Cla011101 I 0.579
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.576
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.575
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.567
30190.m010807 Ricinus communis 30190.m010807 I 0.566
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.565
Pm024077 Prunus mume Pm024077 I 0.565
TCM_016416 Theobroma cacao TCM_016416 I 0.556
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.554
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.544
HMGB13 Arabidopsis thaliana AT4G11080 D 0.537
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.536
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.530
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.525
mgf015439m Mimulus guttatus mgf015439m I 0.525
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.519
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.518
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.510
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.500
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.499
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.494
Bra035256 Brassica rapa Bra035256 I 0.491
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.491
HMGB6 Arabidopsis thaliana AT4G23800 I 0.490
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.490
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.488
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.483
PK10992.1 Cannabis sativa PK10992.1 I 0.481
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.479
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.475
MDP0000268093 Malus domestica MDP0000268093 I 0.474
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.473
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.468
Bo1g037180 Brassica oleracea Bo1g037180 I 0.464
Bra013731 Brassica rapa Bra013731 I 0.464
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.464
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.460
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.458
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.458
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.456
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.454
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.454
Lus10033951.g Linum usitatissimum Lus10033951.g N 0.451
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.450
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.447
Si017040m.g Setaria italica Si017040m.g I 0.440
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.420
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.418
OBART02G11160 Oryza barthii OBART02G11160 I 0.418
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.418
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.418
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.418
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.416