Cagra.3839s0003 (Capsella grandiflora)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cagra.3839s0003 T334407_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.663 0.878
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.663 0.878
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3839s0003.1.p Sox 140 208
Cagra.3839s0003.1.p Sox 257 323
Cagra.3839s0003.1.p Sox 383 451

Links

Other Sox family TFs
Other Capsella grandiflora TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.733
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.671
HMGB13 Arabidopsis thaliana AT4G11080 D 0.663
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.654
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.629
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.612
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.610
HMGB6 Arabidopsis thaliana AT4G23800 I 0.591
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.587
Bra035256 Brassica rapa Bra035256 I 0.577
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.562
Bo1g037180 Brassica oleracea Bo1g037180 I 0.537
Bra013731 Brassica rapa Bra013731 I 0.537
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.529
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.516
TCM_016416 Theobroma cacao TCM_016416 I 0.515
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.510
Pm024077 Prunus mume Pm024077 I 0.510
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.506
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.506
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.503
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.496
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.495
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.491
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.487
mgf015439m Mimulus guttatus mgf015439m I 0.487
30190.m010807 Ricinus communis 30190.m010807 I 0.479
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.477
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.476
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.472
PK10992.1 Cannabis sativa PK10992.1 I 0.465
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.456
Cla011101 Citrullus lanatus Cla011101 I 0.454
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.445
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.441
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.427
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.424
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.422
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.420
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.420
Si017040m.g Setaria italica Si017040m.g I 0.420
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.418
OBART02G11160 Oryza barthii OBART02G11160 I 0.418
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.418
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.418
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.418