Thhalv10028648m.g (Eutrema salsugineum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Thhalv10028648m.g T334741_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.662 0.878
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.662 0.878
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10028648m Sox 138 206
Thhalv10028648m Sox 255 321
Thhalv10028648m Sox 381 449

Links

Other Sox family TFs
Other Eutrema salsugineum TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HMGB13 Arabidopsis thaliana AT4G11080 D 0.662
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.662
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.661
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.654
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.628
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.599
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.594
Bra035256 Brassica rapa Bra035256 I 0.584
HMGB6 Arabidopsis thaliana AT4G23800 I 0.582
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.568
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.563
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.539
Bo1g037180 Brassica oleracea Bo1g037180 I 0.529
Bra013731 Brassica rapa Bra013731 I 0.529
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.517
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.512
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.510
TCM_016416 Theobroma cacao TCM_016416 I 0.507
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.502
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.500
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.498
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.497
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.496
Pm024077 Prunus mume Pm024077 I 0.496
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.482
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.476
30190.m010807 Ricinus communis 30190.m010807 I 0.471
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.470
PK10992.1 Cannabis sativa PK10992.1 I 0.467
mgf015439m Mimulus guttatus mgf015439m I 0.466
Cla011101 Citrullus lanatus Cla011101 I 0.455
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.446
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.440
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.436
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.432
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.430
Ca_05811 Cicer arietinum Ca_05811 I 0.425
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.423
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.422
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.421
MDP0000268093 Malus domestica MDP0000268093 I 0.419