Lus10032379.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10032379.g T334580_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.503 0.657
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.503 0.657
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10032379 Sox 172 240
Lus10032379 Sox 289 361
Lus10032379 Sox 424 493

Links

Other Sox family TFs
Other Linum usitatissimum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.609
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.589
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.576
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.572
Pm024077 Prunus mume Pm024077 I 0.572
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.567
TCM_016416 Theobroma cacao TCM_016416 I 0.564
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.563
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.552
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.545
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.544
30190.m010807 Ricinus communis 30190.m010807 I 0.532
Cla011101 Citrullus lanatus Cla011101 I 0.518
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.515
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.513
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.513
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.511
Lus10033951.g Linum usitatissimum Lus10033951.g N 0.510
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.506
HMGB13 Arabidopsis thaliana AT4G11080 D 0.503
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.502
mgf015439m Mimulus guttatus mgf015439m I 0.496
HMGB6 Arabidopsis thaliana AT4G23800 I 0.495
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.494
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.492
Bo1g037180 Brassica oleracea Bo1g037180 I 0.490
Bra013731 Brassica rapa Bra013731 I 0.490
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.490
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.489
Bra035256 Brassica rapa Bra035256 I 0.487
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.487
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.479
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.468
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.466
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.463
MDP0000268093 Malus domestica MDP0000268093 I 0.462
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.461
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.461
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.454
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.449
PK10992.1 Cannabis sativa PK10992.1 I 0.448
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.443
Si017040m.g Setaria italica Si017040m.g I 0.440
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.439
Lus10023091.g Linum usitatissimum Lus10023091.g N 0.435
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.434
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.427
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.420
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.416