PK10992.1 (Cannabis sativa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 PK10992.1 T334928_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.503 0.685
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.503 0.685
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK10992.1 Sox 203 269
PK10992.1 Sox 322 388
PK10992.1 Sox 449 517

Links

Other Sox family TFs
Other Cannabis sativa TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla011101 Citrullus lanatus Cla011101 I 0.534
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.519
Pm024077 Prunus mume Pm024077 I 0.519
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.515
TCM_016416 Theobroma cacao TCM_016416 I 0.513
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.513
HMGB13 Arabidopsis thaliana AT4G11080 D 0.503
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.503
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.500
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.498
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.497
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.495
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.493
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.493
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.492
30190.m010807 Ricinus communis 30190.m010807 I 0.490
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.488
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.481
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.481
mgf015439m Mimulus guttatus mgf015439m I 0.478
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.474
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.468
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.467
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.467
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.466
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.465
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.459
HMGB6 Arabidopsis thaliana AT4G23800 I 0.458
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.456
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.449
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.449
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.448
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.447
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.447
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.446
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.445
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.441
Si017040m.g Setaria italica Si017040m.g I 0.436
MDP0000268093 Malus domestica MDP0000268093 I 0.436
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.433
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.433
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.433
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.432
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.432
Bra035256 Brassica rapa Bra035256 I 0.418