Lus10030892.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10030892.g T334578_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.614 0.725
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.585 0.600
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.585 0.600
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.584 0.700
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.584 0.700
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.567 0.800
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10030892 Sox 60 99

Links

Other Sox family TFs
Other Linum usitatissimum TFs

474 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R011464 Calypte anna Aan_R011464 N
Alligator_sinensis_CCG016667.1 Alligator sinensis Alligator_sinensis_CCG016667.1 N
Cmyd_10010458 Chelonia mydas Cmyd_10010458 N
TRERF1 Anolis carolinensis ENSACAG00000001080 N
ENSAPLG00000014876 Anas platyrhynchos ENSAPLG00000014876 N
TRERF1 Bos taurus ENSBTAG00000015321 N
ENSBTAP00000020376-D1 Bos grunniens ENSBTAP00000020376-D1 N
TRERF1 Canis familiaris ENSCAFG00000001642 N
TRERF1 Choloepus hoffmanni ENSCHOG00000006120 N
TRERF1 Callithrix jacchus ENSCJAG00000004347 N
TRERF1 Cavia porcellus ENSCPOG00000015717 N
TRERF1 Equus caballus ENSECAG00000016971 N
ENSFALG00000012590 Ficedula albicollis ENSFALG00000012590 N
TRERF1 Felis catus ENSFCAG00000011210 N
TRERF1 Homo sapiens ENSG00000124496 N
TRERF1 Gallus gallus ENSGALG00000009896 N
TRERF1 Gorilla gorilla ENSGGOG00000012813 N
ENSLACG00000008926 Latimeria chalumnae ENSLACG00000008926 N
TRERF1 Loxodonta africana ENSLAFG00000007825 N
ENSLOCG00000017240 Lepisosteus oculatus ENSLOCG00000017240 N
TRERF1 Meleagris gallopavo ENSMGAG00000013894 N
TRERF1 Myotis lucifugus ENSMLUG00000016748 N
TRERF1 Monodelphis domestica ENSMODG00000019042 N
ENSNLEG00000004772 Nomascus leucogenys ENSNLEG00000004772 N
TRERF1 Ornithorhynchus anatinus ENSOANG00000008467 N
ENSOARG00000003358 Ovis aries ENSOARG00000003358 N
TRERF1 Otolemur garnettii ENSOGAG00000025610 N
ENSP00000362013 Macaca fascicularis ENSP00000362013 N
ENSPANG00000009451 Papio anubis ENSPANG00000009451 N
ENSPPYG00000016614 Pongo abelii ENSPPYG00000016614 N
ENSPSIG00000009755 Pelodiscus sinensis ENSPSIG00000009755 N
TRERF1 Pteropus vampyrus ENSPVAG00000007626 N
Trerf1 Rattus norvegicus ENSRNOG00000022598 N
ENSSHAG00000004599 Sarcophilus harrisii ENSSHAG00000004599 N
TRERF1 Sus scrofa ENSSSCG00000001639 N
ENSSTOG00000022996 Ictidomys tridecemlineatus ENSSTOG00000022996 N
ENSTBEG00000012133 Tupaia belangeri ENSTBEG00000012133 N
TRERF1 Taeniopygia guttata ENSTGUG00000003250 N
ENSTSYG00000003874 Tarsius syrichta ENSTSYG00000003874 N
TRERF1 Tursiops truncatus ENSTTRG00000014065 N
Myotis_brandtii_Trerf1_10015386 Myotis brandtii Myotis_brandtii_Trerf1_10015386 N
Ogr07462 Ophisaurus gracilis Ogr07462 N
Pvit_13408 Pogona vitticeps Pvit_13408 N
trerf1 Xenopus tropicalis XB-GENE-940630 N