Pavir.Ca01033 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.Ca01033 T334664_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca01033.1.p Sox 238 306
Pavir.Ca01033.2.p Sox 237 305

Links

Other Sox family TFs
Other Panicum virgatum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA024846 Oryza indica BGIOSGA024846 N
GRMZM2G051793 Zea mays GRMZM2G051793 N
OB07G12010 Oryza brachyantha OB07G12010 N
OBART07G02450 Oryza barthii OBART07G02450 N
OGLUM07G14260 Oryza glumaepatula OGLUM07G14260 N
OLONG_009970 Oryza longistaminata OLONG_009970 N
OMERI01G11970 Oryza meridionalis OMERI01G11970 N
ONIVA04G19340 Oryza nivara ONIVA04G19340 N
OPUNC07G02500 Oryza punctata OPUNC07G02500 N
ORGLA07G0021600 Oryza glaberrima ORGLA07G0021600 N
ORUFI07G02320 Oryza rufipogon ORUFI07G02320 N
Pavir.Ba03827 Panicum virgatum Pavir.Ba03827 N
Pavir.Bb00243 Panicum virgatum Pavir.Bb00243 N
Si028919m.g Setaria italica Si028919m.g N