LDEC000948 (Leptinotarsa decemlineata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 LDEC000948 T334881_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.569 0.623
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.516 0.652
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.483 0.638
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.483 0.638
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.418 0.493
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LDEC000948-PA Sox 137 205

Links

Other Sox family TFs
Other Leptinotarsa decemlineata TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000018080 Ailuropoda melanoleuca ENSAMEG00000018080 I
ZNF331 Canis familiaris ENSCAFG00000002745 I
ZNF331 Callithrix jacchus ENSCJAG00000018320 I
ENSCSAG00000001925 Chlorocebus sabaeus ENSCSAG00000001925 I
ZNF331 Equus caballus ENSECAG00000007445 I
ZNF331 Echinops telfairi ENSETEG00000009958 N
ZNF331 Homo sapiens ENSG00000130844 D
ZNF331 Gorilla gorilla ENSGGOG00000011056 I
ENSMMUG00000013073 Macaca mulatta ENSMMUG00000013073 I
ENSNLEG00000006177 Nomascus leucogenys ENSNLEG00000006177 I
ZNF331 Otolemur garnettii ENSOGAG00000027404 I
ENSP00000393817 Macaca fascicularis ENSP00000393817 I
ENSPANG00000008083 Papio anubis ENSPANG00000008083 I
ENSPPYG00000010360 Pongo abelii ENSPPYG00000010360 I
ZNF331 Pan troglodytes ENSPTRG00000011430 I
ZNF331 Pteropus vampyrus ENSPVAG00000012600 I
ENSTSYG00000010341 Tarsius syrichta ENSTSYG00000010341 I