LDEC000948 (Leptinotarsa decemlineata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 LDEC000948 T334881_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.569 0.623
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.516 0.652
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.483 0.638
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.483 0.638
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.418 0.493
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LDEC000948-PA Sox 137 205

Links

Other Sox family TFs
Other Leptinotarsa decemlineata TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
YQE_06837 Dendroctonus ponderosae YQE_06837 I 0.735
TC007499 Tribolium castaneum TC007499 I 0.701
GB48450 Apis mellifera GB48450 I 0.640
SINV12425 Solenopsis invicta SINV12425 I 0.640
Cflo_04908--XP_624175.2_APIME Camponotus floridanus Cflo_04908--XP_624175.2_APIME I 0.640
Hsal_01854--XP_624175.2_APIME Harpegnathos saltator Hsal_01854--XP_624175.2_APIME I 0.608
BGIBMGA008274 Bombyx mori BGIBMGA008274 I 0.605
HMEL012996 Heliconius melpomene HMEL012996 I 0.605
ISCW010061 Ixodes scapularis ISCW010061 I 0.601
L798_02329 Zootermopsis nevadensis L798_02329 I 0.594
CpipJ_CPIJ005582 Culex pipiens CpipJ_CPIJ005582 I 0.591
AAEL011161 Aedes aegypti AAEL011161 I 0.591
CPIJ005582 Culex quinquefasciatus CPIJ005582 I 0.591
LCUP006498 Lucilia cuprina LCUP006498 I 0.577
MDOA012813 Musca domestica MDOA012813 I 0.577
ACEP13490 Atta cephalotes ACEP13490 I 0.572
bbx Drosophila melanogaster FBgn0024251 D 0.569
GA16961 Drosophila pseudoobscura FBgn0076975 I 0.569
GF20922 Drosophila ananassae FBgn0097927 I 0.569
GG19727 Drosophila erecta FBgn0111928 I 0.569
GI21541 Drosophila mojavensis FBgn0144271 I 0.569
GM23082 Drosophila sechellia FBgn0177950 I 0.569
GJ16014 Drosophila virilis FBgn0203199 I 0.569
GK25081 Drosophila willistoni FBgn0227040 I 0.569
GE17925 Drosophila yakuba FBgn0235361 I 0.569
tetur23g01950 Tetranychus urticae tetur23g01950 I 0.564
CapteG223458 Capitella teleta CapteG223458 I 0.550
CapteG39110 Capitella teleta CapteG39110 I 0.550
CGI_10018417 Crassostrea gigas CGI_10018417 I 0.550
LotgiG89909 Lottia gigantea LotgiG89909 I 0.550
AMAM016153 Anopheles maculatus AMAM016153 I 0.531
ASTEI00827 Anopheles stephensi ASTEI00827 I 0.531
ASTEI11145 Anopheles stephensi ASTEI11145 I 0.531
BGLB009093 Biomphalaria glabrata BGLB009093 I 0.531
KGM_16790 Danaus plexippus KGM_16790 I 0.528
Bbx Mus musculus ENSMUSG00000022641 D 0.516
Bbx Rattus norvegicus ENSRNOG00000001971 I 0.516
bbx Takifugu rubripes ENSTRUG00000003077 I 0.516
SMAR012744 Strigamia maritima SMAR012744 I 0.507
ADIR003385 Anopheles dirus ADIR003385 I 0.504
AGAP003896 Anopheles gambiae AGAP003896 I 0.500
AGAP003897 Anopheles gambiae AGAP003897 I 0.500
AARA009897 Anopheles arabiensis AARA009897 I 0.500
ACOM034716 Anopheles coluzzii ACOM034716 I 0.500
AEPI004245 Anopheles epiroticus AEPI004245 I 0.500
AQUA002577 Anopheles quadriannulatus AQUA002577 I 0.500
AMIN000258 Anopheles minimus AMIN000258 I 0.498
ADAC009062 Anopheles darlingi ADAC009062 I 0.496
ACHR004909 Anopheles christyi ACHR004909 I 0.491
AFUN003674 Anopheles funestus AFUN003674 I 0.491
ENSAMEG00000002574 Ailuropoda melanoleuca ENSAMEG00000002574 I 0.483
ENSAMXG00000017656 Astyanax mexicanus ENSAMXG00000017656 I 0.483
ENSAPLG00000005336 Anas platyrhynchos ENSAPLG00000005336 I 0.483
BBX Bos taurus ENSBTAG00000006893 I 0.483
BBX Canis familiaris ENSCAFG00000009867 I 0.483
BBX Callithrix jacchus ENSCJAG00000004843 I 0.483
BBX Cavia porcellus ENSCPOG00000003575 I 0.483
ENSCSAG00000006313 Chlorocebus sabaeus ENSCSAG00000006313 I 0.483
bbx Danio rerio ENSDARG00000012699 I 0.483
BBX Dasypus novemcinctus ENSDNOG00000013923 I 0.483
Bbx Dipodomys ordii ENSDORG00000008169 I 0.483
BBX Equus caballus ENSECAG00000023413 I 0.483
BBX Erinaceus europaeus ENSEEUG00000014092 I 0.483
BBX Echinops telfairi ENSETEG00000005122 I 0.483
BBX Felis catus ENSFCAG00000007296 I 0.483
BBX Homo sapiens ENSG00000114439 D 0.483
bbx Gasterosteus aculeatus ENSGACG00000020111 I 0.483
BBX Gorilla gorilla ENSGGOG00000028441 I 0.483
ENSGMOG00000015829 Gadus morhua ENSGMOG00000015829 I 0.483
ENSLACG00000001134 Latimeria chalumnae ENSLACG00000001134 I 0.483
BBX Loxodonta africana ENSLAFG00000006362 I 0.483
BBX Meleagris gallopavo ENSMGAG00000014384 I 0.483
BBX Myotis lucifugus ENSMLUG00000007351 I 0.483
BBX Macaca mulatta ENSMMUG00000008787 I 0.483
BBX Monodelphis domestica ENSMODG00000001748 I 0.483
ENSMPUG00000009907 Mustela putorius furo ENSMPUG00000009907 I 0.483
ENSNLEG00000003524 Nomascus leucogenys ENSNLEG00000003524 I 0.483
BBX Ornithorhynchus anatinus ENSOANG00000007497 I 0.483
ENSOARG00000018829 Ovis aries ENSOARG00000018829 I 0.483
BBX Oryctolagus cuniculus ENSOCUG00000001686 I 0.483
BBX Otolemur garnettii ENSOGAG00000008056 I 0.483
BBX Ochotona princeps ENSOPRG00000017013 I 0.483
bbx Oryzias latipes ENSORLG00000005486 I 0.483
ENSPANG00000018335 Papio anubis ENSPANG00000018335 I 0.483
BBX Procavia capensis ENSPCAG00000013443 I 0.483
ENSPFOG00000000813 Poecilia formosa ENSPFOG00000000813 I 0.483
ENSPPYG00000013578 Pongo abelii ENSPPYG00000013578 I 0.483
ENSPSIG00000015872 Pelodiscus sinensis ENSPSIG00000015872 I 0.483
BBX Pan troglodytes ENSPTRG00000015187 I 0.483
BBX Pteropus vampyrus ENSPVAG00000010534 I 0.483
ENSSHAG00000003009 Sarcophilus harrisii ENSSHAG00000003009 I 0.483
BBX Sus scrofa ENSSSCG00000011943 I 0.483
bbx Tetraodon nigroviridis ENSTNIG00000008596 I 0.483
ENSTSYG00000000857 Tarsius syrichta ENSTSYG00000000857 I 0.483
BBX Tursiops truncatus ENSTTRG00000013182 I 0.483
BBX Vicugna pacos ENSVPAG00000007818 I 0.483
ENSXMAG00000009457 Xiphophorus maculatus ENSXMAG00000009457 I 0.483
Aan_R014485 Calypte anna Aan_R014485 I 0.483
Afo_R006638 Aptenodytes forsteri Afo_R006638 I 0.483
Alligator_sinensis_CCG019960.1 Alligator sinensis Alligator_sinensis_CCG019960.1 I 0.483
Cmyd_10015225 Chelonia mydas Cmyd_10015225 I 0.483
ENSBTAP00000009058-D1 Bos grunniens ENSBTAP00000009058-D1 I 0.483
ENSMMUP00000011518 Macaca fascicularis ENSMMUP00000011518 I 0.483
Myotis_brandtii_BBX_10016000 Myotis brandtii Myotis_brandtii_BBX_10016000 I 0.483
Tal_R013114 Tyto alba Tal_R013114 I 0.483
bbx.L Xenopus laevis XB-GENE-981431 I 0.483
XP_002932333 Xenopus tropicalis XP_002932333 I 0.483
BBX Anolis carolinensis ENSACAG00000006532 I 0.480
ENSFALG00000006478 Ficedula albicollis ENSFALG00000006478 I 0.480
ENSONIG00000004775 Oreochromis niloticus ENSONIG00000004775 I 0.480
ENSTGUG00000013611 Taeniopygia guttata ENSTGUG00000013611 I 0.480
Brh_R008020 Buceros rhinoceros Brh_R008020 I 0.480
Gfo_R002593 Geospiza fortis Gfo_R002593 I 0.480
Ogr11041 Ophisaurus gracilis Ogr11041 I 0.480
Pvit_02469 Pogona vitticeps Pvit_02469 I 0.480
PHUM230960 Pediculus humanus PHUM230960 I 0.477
AFAF016820 Anopheles farauti AFAF016820 I 0.472
AALB008976 Anopheles albimanus AALB008976 N 0.466
AATE006341 Anopheles atroparvus AATE006341 I 0.458
Sakowv30039572m.g Saccoglossus kowalevskii Sakowv30039572m.g I 0.457
Ocbimv22001036m.g Octopus bimaculoides Ocbimv22001036m.g I 0.437
GH23608 Drosophila grimshawi FBgn0131065 I 0.432
scaffold4-EXSNAP2012.129 Pristionchus exspectatus scaffold4-EXSNAP2012.129 I 0.431
GJ23448 Drosophila virilis FBgn0210547 I 0.425
LCUP009387 Lucilia cuprina LCUP009387 I 0.425
MDOA004531 Musca domestica MDOA004531 I 0.425
GF17645 Drosophila ananassae FBgn0094663 I 0.418
GG23823 Drosophila erecta FBgn0115962 I 0.418
GM23104 Drosophila sechellia FBgn0177972 I 0.418
GD19345 Drosophila simulans FBgn0190847 I 0.418
GK10919 Drosophila willistoni FBgn0212930 I 0.418
GE25659 Drosophila yakuba FBgn0242721 I 0.418
cic Drosophila melanogaster FBgn0262582 D 0.418
RSKR_0000077800 Rhabditophanes kr3021 RSKR_0000077800 I 0.418
ENSLOCG00000005165 Lepisosteus oculatus ENSLOCG00000005165 I 0.416