Brh_R009637 (Buceros rhinoceros)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Brh_R009637 T343055_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.896 0.896
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.896 0.896
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.896 0.896
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.896 0.896
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.896 0.896
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.896 0.896
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.896 0.896
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.896 0.896
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.896 0.896
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.896 0.896
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.774 0.774
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.774 0.774
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.774 0.774
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R009637 TBP 63 145
Brh_R009637 TBP 153 233

Links

Other TBP family TFs
Other Buceros rhinoceros TFs

740 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29589.m001269 Ricinus communis 29589.m001269 N
AMTR_s00140p00061590 Amborella trichopoda AMTR_s00140p00061590 N
Aquca_009_01096 Aquilegia coerulea Aquca_009_01096 N
BGIOSGA015622 Oryza indica BGIOSGA015622 N
BGIOSGA026480 Oryza indica BGIOSGA026480 N
BRADI3G12490 Brachypodium distachyon BRADI3G12490 N
cassava27114.m1 Manihot esculenta cassava27114.m1 N
cassava28521.m1 Manihot esculenta cassava28521.m1 N
Ca_07000 Cicer arietinum Ca_07000 N
chr3.CM0070.360.nc Lotus japonicus chr3.CM0070.360.nc N
Ciclev10029807m.g Citrus clementina Ciclev10029807m.g N
Ciclev10029984m.g Citrus clementina Ciclev10029984m.g N
Cucsa.200410 Cucumis sativus Cucsa.200410 N
Eucgr.B03926 Eucalyptus grandis Eucgr.B03926 N
Eucgr.J00391 Eucalyptus grandis Eucgr.J00391 N
gene01102-v1.0-hybrid Fragaria vesca gene01102-v1.0-hybrid N
GLYMA11G19810 Glycine max GLYMA11G19810 N
GLYMA12G08680 Glycine max GLYMA12G08680 N
GLYMA12G30285 Glycine max GLYMA12G30285 N
GLYMA13G39610 Glycine max GLYMA13G39610 N
Gorai.006G104700 Gossypium raimondii Gorai.006G104700 N
Gorai.009G090000 Gossypium raimondii Gorai.009G090000 N
GSMUA_Achr11G02230_001 Musa acuminata GSMUA_Achr11G02230_001 N
GSMUA_Achr1G15330_001 Musa acuminata GSMUA_Achr1G15330_001 N
LPERR08G20460 Leersia perrieri LPERR08G20460 N
MDP0000224892 Malus domestica MDP0000224892 N
MDP0000610922 Malus domestica MDP0000610922 N
mgf025993m Mimulus guttatus mgf025993m N
OB08G30610 Oryza brachyantha OB08G30610 N
OBART04G02230 Oryza barthii OBART04G02230 N
OGLUM04G01880 Oryza glumaepatula OGLUM04G01880 N
OGLUM08G25260 Oryza glumaepatula OGLUM08G25260 N
OLONG_023180 Oryza longistaminata OLONG_023180 N
OMERI04G02190 Oryza meridionalis OMERI04G02190 N
OMERI08G18590 Oryza meridionalis OMERI08G18590 N
ONIVA08G18580 Oryza nivara ONIVA08G18580 N
OPUNC04G02200 Oryza punctata OPUNC04G02200 N
OPUNC08G21710 Oryza punctata OPUNC08G21710 N
orange1.1g042026m.g Citrus sinensis orange1.1g042026m.g N
orange1.1g044007m.g Citrus sinensis orange1.1g044007m.g N
ORGLA04G0016600 Oryza glaberrima ORGLA04G0016600 N
ORGLA08G0191700 Oryza glaberrima ORGLA08G0191700 N
ORUFI04G02970 Oryza rufipogon ORUFI04G02970 N
ORUFI08G26260 Oryza rufipogon ORUFI08G26260 N
OS04G0165200 Oryza sativa OS04G0165200 N
OS08G0562300 Oryza sativa OS08G0562300 N
Pavir.Fa00049 Panicum virgatum Pavir.Fa00049 N
Pavir.Fb02219 Panicum virgatum Pavir.Fb02219 N
PGSC0003DMG400000419 Solanum tuberosum PGSC0003DMG400000419 N
Pm001162 Prunus mume Pm001162 N
POPTR_0004s22670 Populus trichocarpa POPTR_0004s22670 N
PRUPE_ppa019036mg Prunus persica PRUPE_ppa019036mg N
SapurV1A.0360s0140 Salix purpurea SapurV1A.0360s0140 N
Sb07g023890 Sorghum bicolor Sb07g023890 N
Si013894m.g Setaria italica Si013894m.g N
Solyc11g066420.1 Solanum lycopersicum Solyc11g066420.1 N
TCM_041585 Theobroma cacao TCM_041585 N
TRIUR3_12142 Triticum urartu TRIUR3_12142 N
VIT_06s0061g00780 Vitis vinifera VIT_06s0061g00780 N