Carubv10010337m.g (Capsella rubella)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Carubv10010337m.g T343153_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.856 0.856
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.856 0.856
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.856 0.856
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.832 0.832
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.832 0.832
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.832 0.832
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.832 0.832
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.832 0.832
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.832 0.832
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.832 0.832
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.832 0.832
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.832 0.832
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.832 0.832
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10010337m TBP 22 104
Carubv10010337m TBP 112 195

Links

Other TBP family TFs
Other Capsella rubella TFs

791 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28211.m000132 Ricinus communis 28211.m000132 I
29889.m003388 Ricinus communis 29889.m003388 I
30076.m004574 Ricinus communis 30076.m004574 I
30170.m014245 Ricinus communis 30170.m014245 I
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I
AMTR_s00062p00211520 Amborella trichopoda AMTR_s00062p00211520 I
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I
SPL14 Arabidopsis thaliana AT1G20980 D
SPL4 Arabidopsis thaliana AT1G53160 D
AT1G76580 Arabidopsis thaliana AT1G76580 D
SPL1 Arabidopsis thaliana AT2G47070 D
SPL5 Arabidopsis thaliana AT3G15270 D
SPL12 Arabidopsis thaliana AT3G60030 D
BGIOSGA016888 Oryza indica BGIOSGA016888 I
SPL15 Oryza indica BGIOSGA028994 I
Bo2g091010 Brassica oleracea Bo2g091010 I
Bo4g005730 Brassica oleracea Bo4g005730 I
Bo5g030930 Brassica oleracea Bo5g030930 I
Bo5g127310 Brassica oleracea Bo5g127310 I
Bo6g029290 Brassica oleracea Bo6g029290 I
Bo6g120690 Brassica oleracea Bo6g120690 I
Bostr.0124s0106 Boechera stricta Bostr.0124s0106 I
Bostr.20129s0096 Boechera stricta Bostr.20129s0096 I
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I
Bostr.28625s0189 Boechera stricta Bostr.28625s0189 I
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I
Bostr.7128s0689 Boechera stricta Bostr.7128s0689 I
Bra015732 Brassica rapa Bra015732 I
Bra025863 Brassica rapa Bra025863 I
Bra027265 Brassica rapa Bra027265 I
Bra038101 Brassica rapa Bra038101 I
Bra041037 Brassica rapa Bra041037 I
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I
Carubv10008169m.g Capsella rubella Carubv10008169m.g I
Carubv10012577m.g Capsella rubella Carubv10012577m.g I
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I
cassava7404.valid.m1 Manihot esculenta cassava7404.valid.m1 I
Ca_01036 Cicer arietinum Ca_01036 I
Ca_03548 Cicer arietinum Ca_03548 I
Ca_18591 Cicer arietinum Ca_18591 I
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I
Ciclev10000100m.g Citrus clementina Ciclev10000100m.g I
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I
Cla002263 Citrullus lanatus Cla002263 I
Cla017596 Citrullus lanatus Cla017596 I
Cucsa.192470 Cucumis sativus Cucsa.192470 I
Cucsa.272530 Cucumis sativus Cucsa.272530 I
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I
Eucgr.F01828 Eucalyptus grandis Eucgr.F01828 I
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I
evm.TU.supercontig_36.105 Carica papaya evm.TU.supercontig_36.105 I
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I
F775_27970 Aegilops tauschii F775_27970 I
F775_31139 Aegilops tauschii F775_31139 I
SPL14 Arabidopsis lyrata fgenesh2_kg.1__2292__AT1G20980.1 I
SPL4 Arabidopsis lyrata fgenesh2_kg.1__4389__AT1G53160.2 I
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I
gene29149-v1.0-hybrid Fragaria vesca gene29149-v1.0-hybrid I
GLYMA02G01160 Glycine max GLYMA02G01160 I
GLYMA07G19770 Glycine max GLYMA07G19770 I
GLYMA07G36180 Glycine max GLYMA07G36180 I
GLYMA09G09790 Glycine max GLYMA09G09790 I
GLYMA10G01211 Glycine max GLYMA10G01211 I
GLYMA15G21860 Glycine max GLYMA15G21860 I
GLYMA17G04400 Glycine max GLYMA17G04400 I
GLYMA20G00900 Glycine max GLYMA20G00900 I
Gorai.002G112200 Gossypium raimondii Gorai.002G112200 I
Gorai.005G071400 Gossypium raimondii Gorai.005G071400 I
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I
GRMZM2G098557 Zea mays GRMZM2G098557 I
GRMZM2G156756 Zea mays GRMZM2G156756 I
GRMZM2G169270 Zea mays GRMZM2G169270 I
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I
LPERR03G34030 Leersia perrieri LPERR03G34030 I
LPERR08G17180 Leersia perrieri LPERR08G17180 I
Lus10004523.g Linum usitatissimum Lus10004523.g I
Lus10010071.g Linum usitatissimum Lus10010071.g I
MDP0000149339 Malus domestica MDP0000149339 I
MDP0000180408 Malus domestica MDP0000180408 I
MDP0000180409 Malus domestica MDP0000180409 I
MDP0000919693 Malus domestica MDP0000919693 I
MDP0000919694 Malus domestica MDP0000919694 I
mgf001202m Mimulus guttatus mgf001202m I
mgf009459m Mimulus guttatus mgf009459m I
mgf016414m Mimulus guttatus mgf016414m I
MLOC_4792 Hordeum vulgare MLOC_4792 I
MLOC_4830 Hordeum vulgare MLOC_4830 I
MTR_1g035010 Medicago truncatula MTR_1g035010 I
MTR_1g086250 Medicago truncatula MTR_1g086250 I
MTR_2g046550 Medicago truncatula MTR_2g046550 I
MTR_2g078770 Medicago truncatula MTR_2g078770 I
MTR_7g110320 Medicago truncatula MTR_7g110320 I
OB03G47050 Oryza brachyantha OB03G47050 I
OB04G27960 Oryza brachyantha OB04G27960 I
OB08G27190 Oryza brachyantha OB08G27190 I
OBART03G39900 Oryza barthii OBART03G39900 I
OBART04G20940 Oryza barthii OBART04G20940 I
OBART08G20320 Oryza barthii OBART08G20320 I
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I
OLONG_014873 Oryza longistaminata OLONG_014873 I
OMERI02G02300 Oryza meridionalis OMERI02G02300 I
OMERI03G36740 Oryza meridionalis OMERI03G36740 I
OMERI04G17360 Oryza meridionalis OMERI04G17360 I
ONIVA03G41820 Oryza nivara ONIVA03G41820 I
ONIVA04G19190 Oryza nivara ONIVA04G19190 I
ONIVA08G22940 Oryza nivara ONIVA08G22940 I
OPUNC03G37130 Oryza punctata OPUNC03G37130 I
OPUNC03G37170 Oryza punctata OPUNC03G37170 I
OPUNC04G18620 Oryza punctata OPUNC04G18620 I
OPUNC08G18470 Oryza punctata OPUNC08G18470 I
orange1.1g001317m.g Citrus sinensis orange1.1g001317m.g I
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I
SPL6 Oryza sativa OS03G0833300 I
SPL7 Oryza sativa OS04G0551500 I
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I
Pavir.J01500 Panicum virgatum Pavir.J01500 I
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I
PGSC0003DMG400027151 Solanum tuberosum PGSC0003DMG400027151 I
PK06791.1 Cannabis sativa PK06791.1 D
PK11310.1 Cannabis sativa PK11310.1 I
PK25661.1 Cannabis sativa PK25661.1 I
Pm008474 Prunus mume Pm008474 I
Pm008475 Prunus mume Pm008475 I
Pm022881 Prunus mume Pm022881 I
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I
POPTR_0002s00440 Populus trichocarpa POPTR_0002s00440 D
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I
POPTR_0005s28010 Populus trichocarpa POPTR_0005s28010 I
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I
POPTR_0010s16370 Populus trichocarpa POPTR_0010s16370 I
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I
PRUPE_ppa000682mg Prunus persica PRUPE_ppa000682mg D
PRUPE_ppa000690mg Prunus persica PRUPE_ppa000690mg I
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I
SapurV1A.0016s0070 Salix purpurea SapurV1A.0016s0070 I
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I
SapurV1A.0554s0130 Salix purpurea SapurV1A.0554s0130 I
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I
Sb01g002530 Sorghum bicolor Sb01g002530 I
Sb07g027420 Sorghum bicolor Sb07g027420 I
scaffold_202615.1 Arabidopsis lyrata scaffold_202615.1 I
SPL12 Arabidopsis lyrata scaffold_503227.1 I
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I
Si013151m.g Setaria italica Si013151m.g I
Si034095m.g Setaria italica Si034095m.g I
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I
Solyc05g053240.2 Solanum lycopersicum Solyc05g053240.2 I
TCM_004922 Theobroma cacao TCM_004922 I
TCM_021482 Theobroma cacao TCM_021482 I
TCM_031595 Theobroma cacao TCM_031595 I
TCM_034803 Theobroma cacao TCM_034803 I
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I
Thhalv10006656m.g Eutrema salsugineum Thhalv10006656m.g I
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I
Thhalv10018054m.g Eutrema salsugineum Thhalv10018054m.g I
Thhalv10021617m.g Eutrema salsugineum Thhalv10021617m.g I
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I
TRIUR3_31982 Triticum urartu TRIUR3_31982 I
TRIUR3_33729 Triticum urartu TRIUR3_33729 I
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I