CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

TCP15 *(Arabidopsis thaliana)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	AT1G69690	T343681_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	(Direct)	(Direct)
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	(Direct)	(Direct)
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	(Direct)	(Direct)
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.974	0.651
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.971	0.620
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.963	0.566
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.960	0.473
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.959	0.543
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.959	0.543
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.959	0.496
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.958	0.488
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.958	0.488
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.958	0.488
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.957	0.481
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.957	0.512
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.956	0.465
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.955	0.535
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.955	0.465
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.955	0.496
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.955	0.496
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.954	0.496
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.954	0.473
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.953	0.450
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.953	0.450
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.953	0.450
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.953	0.450
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.950	0.473
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.946	0.450
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.946	0.442
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.946	0.465
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.944	0.442
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.944	0.442
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.893	0.419
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.893	0.419
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M00892_2.00	TCP	50	192	TSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSRSSLSAAHLRTTPSSYYFHSPHQSMTHHLQHQHQVRPKNESHSSSSSSSQLLDHNQMGNYLVQSTA

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AT1G69690.1	TCP	50	192	TSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSRSSLSAAHLRTTPSSYYFHSPHQSMTHHLQHQHQVRPKNESHSSSSSSSQLLDHNQMGNYLVQSTA

Links
Other TCP family TFs
Other *Arabidopsis thaliana* TFs

657 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
22012_YPL075W	Saccharomyces mikatae	22012_YPL075W	I
22618_YPL075W	Saccharomyces paradoxus	22618_YPL075W	I
AACERI_AaceriAEL245W	Saccharomycetaceae sp ashbya aceri	AACERI_AaceriAEL245W	I
AGOS_AEL245W	Ashbya gossypii	AGOS_AEL245W	I
CAGL0H05379g	Candida glabrata	CAGL0H05379g	I
Ecym_7037	Eremothecium cymbalariae	Ecym_7037	I
KAFR_0E00910	Kazachstania africana	KAFR_0E00910	I
KLLA0_E23431g	Kluyveromyces lactis	KLLA0_E23431g	I
KLTH0E12584g	Lachancea thermotolerans	KLTH0E12584g	I
KLTH0E12584g	Kluyveromyces thermotolerans	KLTH0E12584g	I
KNAG_0A01950	Kazachstania naganishii	KNAG_0A01950	I
Kpol_1048p60	Vanderwaltozyma polyspora	Kpol_1048p60	I
Kwal_12044	Kluyveromyces waltii	Kwal_12044	I
LALA0_S04e03466g	Lachancea lanzarotensis	LALA0_S04e03466g	I
NCAS_0C02090	Naumovozyma castellii	NCAS_0C02090	I
NDAI_0E02800	Naumovozyma dairenensis	NDAI_0E02800	I
SAKL0H10010g	Lachancea kluyveri	SAKL0H10010g	I
Scas_Contig664.15	Saccharomyces castellii	Scas_Contig664.15	I
SKUD_192107	Saccharomyces kudriavzevii	SKUD_192107	I
TBLA_0B04590	Tetrapisispora blattae	TBLA_0B04590	I
TDEL_0B03030	Torulaspora delbrueckii	TDEL_0B03030	I
TPHA_0I01890	Tetrapisispora phaffii	TPHA_0I01890	I
ZBAI_01205	Zygosaccharomyces bailii	ZBAI_01205	I
ZBAI_07289	Zygosaccharomyces bailii	ZBAI_07289	I
ZYRO0D03916g	Zygosaccharomyces rouxii	ZYRO0D03916g	I

TCP15 (Arabidopsis thaliana) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

Experimental Constructs

DNA Binding Domains

Links

657 Related TFs

TCP15 **(Arabidopsis thaliana)
TCP**