Lus10010177.g (Linum usitatissimum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Lus10010177.g T344890_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.969 0.847
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.969 0.847
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.967 0.835
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.962 0.753
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.958 0.647
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.956 0.635
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.956 0.729
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.956 0.729
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.952 0.718
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.952 0.741
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.951 0.729
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.950 0.647
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.950 0.647
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.950 0.647
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.950 0.647
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.950 0.659
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.949 0.706
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.949 0.694
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.947 0.635
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.945 0.682
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.945 0.682
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.945 0.682
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.945 0.682
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.945 0.659
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.941 0.671
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.936 0.624
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.936 0.624
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.933 0.635
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.933 0.635
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.933 0.635
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.932 0.647
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.931 0.647
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.930 0.612
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.858 0.541
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.858 0.541
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10010177 TCP 68 189

Links

Other TCP family TFs
Other Linum usitatissimum TFs

660 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL009442 Aedes aegypti AAEL009442 I
Aan_R000237 Calypte anna Aan_R000237 I
Aan_R005677 Calypte anna Aan_R005677 I
Aan_R011482 Calypte anna Aan_R011482 I
AARA001983 Anopheles arabiensis AARA001983 I
AATE020966 Anopheles atroparvus AATE020966 I
ACUA018111 Anopheles culicifacies ACUA018111 I
ACYPI32234 Acyrthosiphon pisum ACYPI32234 I
AEPI006169 Anopheles epiroticus AEPI006169 I
Afo_R004508 Aptenodytes forsteri Afo_R004508 I
Afo_R004731 Aptenodytes forsteri Afo_R004731 I
AFUN001209 Anopheles funestus AFUN001209 I
Alligator_sinensis_CCG002912.1 Alligator sinensis Alligator_sinensis_CCG002912.1 I
AMEM000126 Anopheles merus AMEM000126 I
AMIN002428 Anopheles minimus AMIN002428 I
ASIS002535 Anopheles sinensis ASIS002535 I
ASTEI05449 Anopheles stephensi ASTEI05449 I
Brh_R009866 Buceros rhinoceros Brh_R009866 I
Brh_R010146 Buceros rhinoceros Brh_R010146 I
Cflo_05052--XP_392513.1_APIME Camponotus floridanus Cflo_05052--XP_392513.1_APIME I
CLEC002857 Cimex lectularius CLEC002857 I
Cmyd_10020806 Chelonia mydas Cmyd_10020806 I
DAPPUDRAFT_222762 Daphnia pulex DAPPUDRAFT_222762 I
ATF3 Anolis carolinensis ENSACAG00000006353 I
FOSL1 Anolis carolinensis ENSACAG00000010103 I
JDP2 Anolis carolinensis ENSACAG00000016944 I
ENSAMEG00000001342 Ailuropoda melanoleuca ENSAMEG00000001342 I
ENSAMEG00000018337 Ailuropoda melanoleuca ENSAMEG00000018337 I
ENSAMXG00000010494 Astyanax mexicanus ENSAMXG00000010494 I
ENSAMXG00000013804 Astyanax mexicanus ENSAMXG00000013804 I
ENSAMXG00000014502 Astyanax mexicanus ENSAMXG00000014502 I
ENSAPLG00000011380 Anas platyrhynchos ENSAPLG00000011380 I
ENSAPLG00000012304 Anas platyrhynchos ENSAPLG00000012304 I
ATF3 Bos taurus ENSBTAG00000008545 I
JDP2 Bos taurus ENSBTAG00000009451 I
ENSBTAP00000011265-D1 Bos grunniens ENSBTAP00000011265-D1 I
ATF3 Canis familiaris ENSCAFG00000012339 I
JDP2 Canis familiaris ENSCAFG00000017042 I
ATF3 Choloepus hoffmanni ENSCHOG00000010259 I
ATF3 Callithrix jacchus ENSCJAG00000015735 I
JDP2 Callithrix jacchus ENSCJAG00000020645 I
ENSCPOG00000006636 Cavia porcellus ENSCPOG00000006636 I
ENSCPOG00000019424 Cavia porcellus ENSCPOG00000019424 I
ENSCSAG00000012122 Chlorocebus sabaeus ENSCSAG00000012122 I
ENSCSAG00000015405 Chlorocebus sabaeus ENSCSAG00000015405 I
ENSCSAVG00000000153 Ciona savignyi ENSCSAVG00000000153 I
atf3 Danio rerio ENSDARG00000007823 I
jdp2b Danio rerio ENSDARG00000020133 I
jdp2a Danio rerio ENSDARG00000040137 I
JDP2 Dasypus novemcinctus ENSDNOG00000033141 I
ENSDNOG00000044236 Dasypus novemcinctus ENSDNOG00000044236 I
ENSDORG00000006025 Dipodomys ordii ENSDORG00000006025 I
ENSDORG00000012888 Dipodomys ordii ENSDORG00000012888 I
ATF3 Equus caballus ENSECAG00000011486 I
JDP2 Equus caballus ENSECAG00000014862 I
ATF3 Erinaceus europaeus ENSEEUG00000010993 I
ATF3 Echinops telfairi ENSETEG00000015701 I
ENSFALG00000006358 Ficedula albicollis ENSFALG00000006358 I
ENSFALG00000012408 Ficedula albicollis ENSFALG00000012408 I
JDP2 Felis catus ENSFCAG00000029464 I
ATF3 Felis catus ENSFCAG00000029636 I
JDP2 Homo sapiens ENSG00000140044 D
ATF3 Homo sapiens ENSG00000162772 D
jdp2a Gasterosteus aculeatus ENSGACG00000007611 I
jdp2b Gasterosteus aculeatus ENSGACG00000010513 I
atf3 Gasterosteus aculeatus ENSGACG00000011997 I
JDP2 Gallus gallus ENSGALG00000010322 I
ATF3 Gallus gallus ENSGALG00000025887 I
JDP2 Gorilla gorilla ENSGGOG00000010752 I
ATF3 Gorilla gorilla ENSGGOG00000014206 I
ENSGMOG00000011063 Gadus morhua ENSGMOG00000011063 I
ENSGMOG00000015382 Gadus morhua ENSGMOG00000015382 I
ENSGMOG00000016268 Gadus morhua ENSGMOG00000016268 I
ENSLACG00000018083 Latimeria chalumnae ENSLACG00000018083 I
JDP2 Loxodonta africana ENSLAFG00000025757 I
ATF3 Loxodonta africana ENSLAFG00000032487 I
ENSLOCG00000000814 Lepisosteus oculatus ENSLOCG00000000814 I
ENSLOCG00000010526 Lepisosteus oculatus ENSLOCG00000010526 I
ENSMEUG00000007708 Macropus eugenii ENSMEUG00000007708 I
ENSMEUG00000010422 Macropus eugenii ENSMEUG00000010422 I
ENSMEUG00000011212 Macropus eugenii ENSMEUG00000011212 I
ATF3 Meleagris gallopavo ENSMGAG00000009708 I
JDP2 Meleagris gallopavo ENSMGAG00000012755 I
ENSMICG00000016031 Microcebus murinus ENSMICG00000016031 I
ENSMLUG00000002256 Myotis lucifugus ENSMLUG00000002256 I
ATF3 Myotis lucifugus ENSMLUG00000015048 I
ATF3 Macaca mulatta ENSMMUG00000012185 I
ENSMMUP00000003747 Macaca fascicularis ENSMMUP00000003747 I
ATF3 Monodelphis domestica ENSMODG00000003042 I
JDP2 Monodelphis domestica ENSMODG00000005909 I
ENSMPUG00000009147 Mustela putorius furo ENSMPUG00000009147 I
ENSMPUG00000015864 Mustela putorius furo ENSMPUG00000015864 I
Atf3 Mus musculus ENSMUSG00000026628 D
Jdp2 Mus musculus ENSMUSG00000034271 D
ENSNLEG00000002916 Nomascus leucogenys ENSNLEG00000002916 I
ENSNLEG00000016475 Nomascus leucogenys ENSNLEG00000016475 I
ATF3 Ornithorhynchus anatinus ENSOANG00000008502 I
ENSOARG00000001796 Ovis aries ENSOARG00000001796 I
ENSOARG00000010493 Ovis aries ENSOARG00000010493 I
JDP2 Oryctolagus cuniculus ENSOCUG00000008466 I
ATF3 Oryctolagus cuniculus ENSOCUG00000017424 I
ATF3 Otolemur garnettii ENSOGAG00000005803 I
JDP2 Otolemur garnettii ENSOGAG00000024796 I
ENSONIG00000015268 Oreochromis niloticus ENSONIG00000015268 I
ENSONIG00000018687 Oreochromis niloticus ENSONIG00000018687 I
ENSONIG00000020186 Oreochromis niloticus ENSONIG00000020186 I
JDP2 Ochotona princeps ENSOPRG00000012032 I
ATF3 Ochotona princeps ENSOPRG00000013252 I
jdp2a Oryzias latipes ENSORLG00000016515 I
jdp2b Oryzias latipes ENSORLG00000017506 I
atf3 Oryzias latipes ENSORLG00000019980 I
ENSP00000267569-D1 Bos grunniens ENSP00000267569-D1 I
ENSP00000355954 Macaca fascicularis ENSP00000355954 I
ENSPANG00000019986 Papio anubis ENSPANG00000019986 I
ENSPANG00000021687 Papio anubis ENSPANG00000021687 I
ATF3 Procavia capensis ENSPCAG00000000178 I
ENSPFOG00000007886 Poecilia formosa ENSPFOG00000007886 I
ENSPFOG00000007903 Poecilia formosa ENSPFOG00000007903 I
ENSPFOG00000015014 Poecilia formosa ENSPFOG00000015014 I
ENSPFOG00000017099 Poecilia formosa ENSPFOG00000017099 I
ENSPMAG00000000427 Petromyzon marinus ENSPMAG00000000427 I
ENSPMAG00000006157 Petromyzon marinus ENSPMAG00000006157 I
ENSPPYG00000000235 Pongo abelii ENSPPYG00000000235 I
ENSPPYG00000006004 Pongo abelii ENSPPYG00000006004 I
ENSPSIG00000017647 Pelodiscus sinensis ENSPSIG00000017647 I
ENSPSIG00000017967 Pelodiscus sinensis ENSPSIG00000017967 I
ATF3 Pan troglodytes ENSPTRG00000001962 I
JDP2 Pan troglodytes ENSPTRG00000006555 I
JDP2 Pteropus vampyrus ENSPVAG00000000672 I
Atf3 Rattus norvegicus ENSRNOG00000003745 I
Jdp2 Rattus norvegicus ENSRNOG00000008224 D
ENSSHAG00000002406 Sarcophilus harrisii ENSSHAG00000002406 I
ENSSHAG00000010413 Sarcophilus harrisii ENSSHAG00000010413 I
ENSSHAG00000017391 Sarcophilus harrisii ENSSHAG00000017391 I
ATF3 Sus scrofa ENSSSCG00000015595 I
ENSSTOG00000007121 Ictidomys tridecemlineatus ENSSTOG00000007121 I
ENSSTOG00000026831 Ictidomys tridecemlineatus ENSSTOG00000026831 I
ATF3 Tupaia belangeri ENSTBEG00000002717 I
ENSTBEG00000014483 Tupaia belangeri ENSTBEG00000014483 I
ATF3 Taeniopygia guttata ENSTGUG00000003050 I
JDP2 Taeniopygia guttata ENSTGUG00000012219 I
atf3 Tetraodon nigroviridis ENSTNIG00000002524 I
ENSTNIG00000016355 Tetraodon nigroviridis ENSTNIG00000016355 I
jdp2a Tetraodon nigroviridis ENSTNIG00000017406 I
jdp2b Takifugu rubripes ENSTRUG00000010344 I
atf3 Takifugu rubripes ENSTRUG00000015975 I
jdp2a Takifugu rubripes ENSTRUG00000018323 I
ENSTSYG00000010193 Tarsius syrichta ENSTSYG00000010193 I
ATF3 Tursiops truncatus ENSTTRG00000013897 I
ENSVPAG00000003090 Vicugna pacos ENSVPAG00000003090 I
ATF3 Vicugna pacos ENSVPAG00000011563 I
ENSXMAG00000004013 Xiphophorus maculatus ENSXMAG00000004013 I
ENSXMAG00000004443 Xiphophorus maculatus ENSXMAG00000004443 I
ENSXMAG00000014805 Xiphophorus maculatus ENSXMAG00000014805 I
Atf3 Drosophila melanogaster FBgn0028550 D
GA10981 Drosophila pseudoobscura FBgn0071037 I
GG12710 Drosophila erecta FBgn0104997 I
GH24925 Drosophila grimshawi FBgn0132380 I
GI21781 Drosophila mojavensis FBgn0144511 I
GL14394 Drosophila persimilis FBgn0151999 I
GM18988 Drosophila sechellia FBgn0173891 I
GJ16954 Drosophila virilis FBgn0204132 I
GK19912 Drosophila willistoni FBgn0221909 I
GE16537 Drosophila yakuba FBgn0234052 I
GB53401 Apis mellifera GB53401 I
Gfo_R010939 Geospiza fortis Gfo_R010939 I
Gfo_R012906 Geospiza fortis Gfo_R012906 I
HMEL006570 Heliconius melpomene HMEL006570 I
Hsal_14793--XP_392513.1_APIME Harpegnathos saltator Hsal_14793--XP_392513.1_APIME I
ISCW023105 Ixodes scapularis ISCW023105 I
KGM_03513 Danaus plexippus KGM_03513 I
L798_12793 Zootermopsis nevadensis L798_12793 I
LCUP009590 Lucilia cuprina LCUP009590 I
LDEC018714 Leptinotarsa decemlineata LDEC018714 I
MCINX010628 Melitaea cinxia MCINX010628 I
MDOA009377 Musca domestica MDOA009377 I
Myotis_brandtii_Atf3_10018256 Myotis brandtii Myotis_brandtii_Atf3_10018256 I
Myotis_brandtii_JDP2_10012947 Myotis brandtii Myotis_brandtii_JDP2_10012947 I
NV16727 Nasonia vitripennis NV16727 I
Ogr08030 Ophisaurus gracilis Ogr08030 I
Ogr11165 Ophisaurus gracilis Ogr11165 I
PHUM288370 Pediculus humanus PHUM288370 I
Pvit_01216 Pogona vitticeps Pvit_01216 I
Pvit_13387 Pogona vitticeps Pvit_13387 I
RPRC001561 Rhodnius prolixus RPRC001561 I
SINV20083 Solenopsis invicta SINV20083 I
Tal_R002996 Tyto alba Tal_R002996 I
Tal_R007524 Tyto alba Tal_R007524 I
TC008201 Tribolium castaneum TC008201 I
atf3 Xenopus tropicalis XB-GENE-6085251 I
atf3.L Xenopus laevis XB-GENE-6085256 I
YQE_04190 Dendroctonus ponderosae YQE_04190 I