Lus10042962.g (Linum usitatissimum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Lus10042962.g T344909_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP24
M02499_2.00 		Arabidopsis thaliana
NNNNRVMCVV
BBGKBYNNNN		 PBM
Weirauch et al.(2014)
pTH7337 		0.898 0.212
TCP24
M07272_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP24_colamp_a 		0.898 0.212
TCP24
M07273_2.00 		Arabidopsis thaliana
NNBGGGACCACH
DGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
TCP24_col 		0.898 0.212
TCP24
M02506_2.00 		Arabidopsis lyrata
NBKKNNMMVN
NBKKNNMMVN		 PBM
Weirauch et al.(2014)
pTH9227 		0.898 0.212
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10042962 TCP 144 341
Lus10042962 TCP 347 451

Links

Other TCP family TFs
Other Linum usitatissimum TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003120 Calypte anna Aan_R003120 I
Afo_R012275 Aptenodytes forsteri Afo_R012275 I
Alligator_sinensis_CCG022066.1 Alligator sinensis Alligator_sinensis_CCG022066.1 I
Brh_R005630 Buceros rhinoceros Brh_R005630 I
Cmyd_10012423 Chelonia mydas Cmyd_10012423 I
ENSACAG00000012378 Anolis carolinensis ENSACAG00000012378 I
ENSAMXG00000025873 Astyanax mexicanus ENSAMXG00000025873 I
ENSAPLG00000001024 Anas platyrhynchos ENSAPLG00000001024 I
BHLHA15 Canis familiaris ENSCAFG00000015425 I
BHLHA15 Callithrix jacchus ENSCJAG00000023085 I
ENSCPOG00000009423 Cavia porcellus ENSCPOG00000009423 I
ENSCSAG00000019492 Chlorocebus sabaeus ENSCSAG00000019492 I
bhlha15 Danio rerio ENSDARG00000045166 I
ENSECAG00000012532 Equus caballus ENSECAG00000012532 I
BHLHA15 Homo sapiens ENSG00000180535 D
bhlha15 Gasterosteus aculeatus ENSGACG00000009403 I
ENSGMOG00000003972 Gadus morhua ENSGMOG00000003972 I
ENSLACG00000013715 Latimeria chalumnae ENSLACG00000013715 I
BHLHA15 Loxodonta africana ENSLAFG00000000139 I
BHLHA15 Meleagris gallopavo ENSMGAG00000015527 I
BHLHA15 Myotis lucifugus ENSMLUG00000009476 I
ENSMMUG00000015478 Macaca mulatta ENSMMUG00000015478 I
BHLHA15 Monodelphis domestica ENSMODG00000025044 I
ENSMPUG00000020102 Mustela putorius furo ENSMPUG00000020102 I
Bhlha15 Mus musculus ENSMUSG00000052271 D
ENSNLEG00000018875 Nomascus leucogenys ENSNLEG00000018875 I
BHLHA15 Ornithorhynchus anatinus ENSOANG00000001937 I
BHLHA15 Oryctolagus cuniculus ENSOCUG00000025058 I
BHLHA15 Otolemur garnettii ENSOGAG00000010106 I
ENSONIG00000021203 Oreochromis niloticus ENSONIG00000021203 I
bhlha15 Oryzias latipes ENSORLG00000003401 I
ENSP00000326391 Macaca fascicularis ENSP00000326391 I
ENSP00000326391-D1 Bos grunniens ENSP00000326391-D1 I
ENSPANG00000010823 Papio anubis ENSPANG00000010823 I
ENSPFOG00000013242 Poecilia formosa ENSPFOG00000013242 I
ENSPPYG00000017361 Pongo abelii ENSPPYG00000017361 I
ENSPSIG00000001236 Pelodiscus sinensis ENSPSIG00000001236 I
BHLHA15 Pan troglodytes ENSPTRG00000019434 I
Bhlha15 Rattus norvegicus ENSRNOG00000025164 I
ENSSHAG00000015620 Sarcophilus harrisii ENSSHAG00000015620 I
ENSSSCG00000007600 Sus scrofa ENSSSCG00000007600 I
ENSSTOG00000009728 Ictidomys tridecemlineatus ENSSTOG00000009728 I
bhlha15 Tetraodon nigroviridis ENSTNIG00000012887 I
bhlha15 Takifugu rubripes ENSTRUG00000016815 I
BHLHA15 Tursiops truncatus ENSTTRG00000015701 I
ENSXMAG00000014837 Xiphophorus maculatus ENSXMAG00000014837 I
estExt_fgenesh2_pg.C_2400032 Branchiostoma floridae estExt_fgenesh2_pg.C_2400032 I
Gfo_R007094 Geospiza fortis Gfo_R007094 I
Ogr03050 Ophisaurus gracilis Ogr03050 I
Pvit_16465 Pogona vitticeps Pvit_16465 I
Tal_R009599 Tyto alba Tal_R009599 I
XP_002931994 Xenopus tropicalis XP_002931994 I