Thhalv10018773m.g (Eutrema salsugineum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Thhalv10018773m.g T345090_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP24
M02499_2.00 		Arabidopsis thaliana
NNNNRVMCVV
BBGKBYNNNN		 PBM
Weirauch et al.(2014)
pTH7337 		0.917 0.346
TCP24
M07272_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP24_colamp_a 		0.917 0.346
TCP24
M07273_2.00 		Arabidopsis thaliana
NNBGGGACCACH
DGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
TCP24_col 		0.917 0.346
TCP24
M02506_2.00 		Arabidopsis lyrata
NBKKNNMMVN
NBKKNNMMVN		 PBM
Weirauch et al.(2014)
pTH9227 		0.915 0.353
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10018773m TCP 106 179
Thhalv10018773m TCP 174 233

Links

Other TCP family TFs
Other Eutrema salsugineum TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F443_10130 Phytophthora parasitica F443_10130 N
HpaG812527 Hyaloperonospora arabidopsidis HpaG812527 N
maker-par_contig_405-snap-gene-0.7 Pythium arrhenomanes maker-par_contig_405-snap-gene-0.7 N
maker-pir_contig_154-snap-gene-0.23 Pythium irregulare maker-pir_contig_154-snap-gene-0.23 N
maker-piw_contig_1640-fgenesh-gene-0.2 Pythium iwayamai maker-piw_contig_1640-fgenesh-gene-0.2 N
maker-pve_contig_11-snap-gene-0.53 Pythium vexans maker-pve_contig_11-snap-gene-0.53 N
PITG_01288 Phytophthora infestans PITG_01288 N
PYU1_G008731 Pythium ultimum PYU1_G008731 N