MTR_1g103180 (Medicago truncatula)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 MTR_1g103180 T345562_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.360
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.355
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.355
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.355
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.329
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.329
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.329
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.329
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.329
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.293
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.289
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.284
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.280
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.268
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.267
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.267
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.267
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.267
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.267
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.267
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.240
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.240
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.240
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.240
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.230
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.227
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.227
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.227
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH43824 TCR/CxC 172 209

Links

Other TCR/CxC family TFs
Other Medicago truncatula TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28179.m000478 Ricinus communis 28179.m000478 I
28179.m000479 Ricinus communis 28179.m000479 I
29804.m001498 Ricinus communis 29804.m001498 I
AMTR_s00033p00078670 Amborella trichopoda AMTR_s00033p00078670 I
Aquca_010_00012 Aquilegia coerulea Aquca_010_00012 I
AT2G22750 Arabidopsis thaliana AT2G22750 D
NAI1 Arabidopsis thaliana AT2G22770 N
BGIOSGA013493 Oryza indica BGIOSGA013493 I
Bo1g017100 Brassica oleracea Bo1g017100 N
Bo4g150960 Brassica oleracea Bo4g150960 I
Bo4g151030 Brassica oleracea Bo4g151030 I
Bo8g100870 Brassica oleracea Bo8g100870 I
Bostr.19427s0044 Boechera stricta Bostr.19427s0044 N
Bostr.25542s0234 Boechera stricta Bostr.25542s0234 I
Bra030207 Brassica rapa Bra030207 I
Bra030210 Brassica rapa Bra030210 I
Bra039924 Brassica rapa Bra039924 I
BRADI1G10170 Brachypodium distachyon BRADI1G10170 I
Cagra.0882s0006 Capsella grandiflora Cagra.0882s0006 N
Cagra.5392s0006 Capsella grandiflora Cagra.5392s0006 I
Carubv10023610m.g Capsella rubella Carubv10023610m.g N
Carubv10025041m.g Capsella rubella Carubv10025041m.g I
cassava16019.m1 Manihot esculenta cassava16019.m1 I
cassava18197.valid.m1 Manihot esculenta cassava18197.valid.m1 I
cassava20178.m1 Manihot esculenta cassava20178.m1 I
cassava35671.valid.m1 Manihot esculenta cassava35671.valid.m1 I
cassava37087.valid.m1 Manihot esculenta cassava37087.valid.m1 I
Ca_02264 Cicer arietinum Ca_02264 I
chr2.CM0021.410.nc Lotus japonicus chr2.CM0021.410.nc I
chr3.LjT47G05.50.nc Lotus japonicus chr3.LjT47G05.50.nc I
chr5.CM0158.350.nd Lotus japonicus chr5.CM0158.350.nd I
Ciclev10027158m.g Citrus clementina Ciclev10027158m.g I
Ciclev10027504m.g Citrus clementina Ciclev10027504m.g I
Ciclev10028925m.g Citrus clementina Ciclev10028925m.g I
Cla000123 Citrullus lanatus Cla000123 I
Cucsa.218800 Cucumis sativus Cucsa.218800 I
Eucgr.H02389 Eucalyptus grandis Eucgr.H02389 I
Eucgr.H02390 Eucalyptus grandis Eucgr.H02390 I
Eucgr.H02391 Eucalyptus grandis Eucgr.H02391 I
Eucgr.I00634 Eucalyptus grandis Eucgr.I00634 I
Eucgr.I02518 Eucalyptus grandis Eucgr.I02518 I
evm.TU.supercontig_129.37 Carica papaya evm.TU.supercontig_129.37 I
evm.TU.supercontig_20.63 Carica papaya evm.TU.supercontig_20.63 I
e_gw1.130.107.1 Physcomitrella patens e_gw1.130.107.1 N
F775_11371 Aegilops tauschii F775_11371 I
fgenesh1_pg.scaffold_4000056 Physcomitrella patens fgenesh1_pg.scaffold_4000056 N
fgenesh1_pg.scaffold_57000137 Physcomitrella patens fgenesh1_pg.scaffold_57000137 N
fgenesh2_kg.4__196__AT2G22750.1 Arabidopsis lyrata fgenesh2_kg.4__196__AT2G22750.1 I
NAI1 Arabidopsis lyrata fgenesh2_kg.4__198__AT2G22770.1 N
fgenesh2_pg.scaffold_77000085 Physcomitrella patens fgenesh2_pg.scaffold_77000085 N
gene05610-v1.0-hybrid Fragaria vesca gene05610-v1.0-hybrid I
gene05612-v1.0-hybrid Fragaria vesca gene05612-v1.0-hybrid I
gene07355-v1.0-hybrid Fragaria vesca gene07355-v1.0-hybrid I
GLYMA01G40620 Glycine max GLYMA01G40620 I
GLYMA07G30420 Glycine max GLYMA07G30420 I
GLYMA11G04690 Glycine max GLYMA11G04690 I
Gorai.002G211500 Gossypium raimondii Gorai.002G211500 I
Gorai.003G034600 Gossypium raimondii Gorai.003G034600 I
Gorai.003G034700 Gossypium raimondii Gorai.003G034700 I
Gorai.007G228900 Gossypium raimondii Gorai.007G228900 I
Gorai.007G229000 Gossypium raimondii Gorai.007G229000 I
Gorai.008G087600 Gossypium raimondii Gorai.008G087600 I
GRMZM2G019806 Zea mays GRMZM2G019806 I
GRMZM2G082343 Zea mays GRMZM2G082343 I
GRMZM2G165090 Zea mays GRMZM2G165090 N
GSMUA_Achr2G08590_001 Musa acuminata GSMUA_Achr2G08590_001 I
GSMUA_Achr4G23070_001 Musa acuminata GSMUA_Achr4G23070_001 I
GSMUA_AchrUn_randomG15440_001 Musa acuminata GSMUA_AchrUn_randomG15440_001 I
LjT17L12.80.nd Lotus japonicus LjT17L12.80.nd I
LPERR03G27220 Leersia perrieri LPERR03G27220 I
Lus10003488.g Linum usitatissimum Lus10003488.g I
Lus10011578.g Linum usitatissimum Lus10011578.g I
Lus10012457.g Linum usitatissimum Lus10012457.g I
Lus10019247.g Linum usitatissimum Lus10019247.g I
Lus10020503.g Linum usitatissimum Lus10020503.g I
Lus10039639.g Linum usitatissimum Lus10039639.g I
MDP0000159571 Malus domestica MDP0000159571 I
MDP0000170202 Malus domestica MDP0000170202 I
MDP0000174149 Malus domestica MDP0000174149 I
MDP0000291132 Malus domestica MDP0000291132 I
MDP0000318216 Malus domestica MDP0000318216 I
MDP0000502440 Malus domestica MDP0000502440 I
MLOC_64735 Hordeum vulgare MLOC_64735 I
MTR_5g014520 Medicago truncatula MTR_5g014520 I
OBART03G32580 Oryza barthii OBART03G32580 I
OGLUM03G32210 Oryza glumaepatula OGLUM03G32210 I
OMERI03G29350 Oryza meridionalis OMERI03G29350 I
ONIVA03G34090 Oryza nivara ONIVA03G34090 I
OPUNC03G29750 Oryza punctata OPUNC03G29750 I
OPUNC12G16280 Oryza punctata OPUNC12G16280 N
orange1.1g021208m.g Citrus sinensis orange1.1g021208m.g I
orange1.1g026436m.g Citrus sinensis orange1.1g026436m.g I
orange1.1g037441m.g Citrus sinensis orange1.1g037441m.g I
ORGLA03G0295100 Oryza glaberrima ORGLA03G0295100 I
ORUFI03G33950 Oryza rufipogon ORUFI03G33950 I
OS03G0725800 Oryza sativa OS03G0725800 I
Pavir.J01849 Panicum virgatum Pavir.J01849 I
Pavir.J35103 Panicum virgatum Pavir.J35103 I
PDK_20s1394471g002 Phoenix dactylifera PDK_20s1394471g002 I
PDK_20s1524891g002 Phoenix dactylifera PDK_20s1524891g002 I
PGSC0003DMG400005101 Solanum tuberosum PGSC0003DMG400005101 I
PK09122.1 Cannabis sativa PK09122.1 I
PK11573.1 Cannabis sativa PK11573.1 I
Pm002304 Prunus mume Pm002304 I
Pm002305 Prunus mume Pm002305 I
Pm021008 Prunus mume Pm021008 I
POPTR_0001s29400 Populus trichocarpa POPTR_0001s29400 I
POPTR_0005s09810 Populus trichocarpa POPTR_0005s09810 I
POPTR_0009s08500 Populus trichocarpa POPTR_0009s08500 I
PRUPE_ppa007561mg Prunus persica PRUPE_ppa007561mg I
PRUPE_ppa008130mg Prunus persica PRUPE_ppa008130mg I
PRUPE_ppa017640mg Prunus persica PRUPE_ppa017640mg I
SapurV1A.0019s0910 Salix purpurea SapurV1A.0019s0910 I
SapurV1A.0279s0180 Salix purpurea SapurV1A.0279s0180 I
SapurV1A.3034s0010 Salix purpurea SapurV1A.3034s0010 I
Sb01g009590 Sorghum bicolor Sb01g009590 I
Sb08g020290 Sorghum bicolor Sb08g020290 N
Sb08g020300 Sorghum bicolor Sb08g020300 N
Sb08g020320 Sorghum bicolor Sb08g020320 N
SELMODRAFT_34848 Selaginella moellendorffii SELMODRAFT_34848 I
SELMODRAFT_48361 Selaginella moellendorffii SELMODRAFT_48361 I
Si024602m.g Setaria italica Si024602m.g N
Si036393m.g Setaria italica Si036393m.g I
Solyc01g106460.2 Solanum lycopersicum Solyc01g106460.2 I
TCM_000894 Theobroma cacao TCM_000894 I
TCM_000895 Theobroma cacao TCM_000895 I
TCM_006357 Theobroma cacao TCM_006357 I
Thhalv10000251m.g Eutrema salsugineum Thhalv10000251m.g N
Thhalv10000426m.g Eutrema salsugineum Thhalv10000426m.g I
Traes_4AL_F3571097B Triticum aestivum Traes_4AL_F3571097B I
Traes_4BS_34AF89ACE Triticum aestivum Traes_4BS_34AF89ACE I
Traes_4DS_7F3D9E4D9 Triticum aestivum Traes_4DS_7F3D9E4D9 I
TRIUR3_26880 Triticum urartu TRIUR3_26880 I
VIT_00s0824g00020 Vitis vinifera VIT_00s0824g00020 I
VIT_00s0927g00010 Vitis vinifera VIT_00s0927g00010 I
VIT_03s0088g01240 Vitis vinifera VIT_03s0088g01240 I
VIT_07s0205g00160 Vitis vinifera VIT_07s0205g00160 I