CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OGLUM05G29120 *(Oryza glumaepatula)* TCR/CxC
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03638 (TCR)	IPR005172	OGLUM05G29120	T345606_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCX4 M02521_2.00	Arabidopsis thaliana	DWTTYRAAWH	DWTTYRAAWH	PBM Weirauch et al.(2014) pTH7573	0.672	0.487
fgenesh1_pg.C_Chr_09.0001000301 M02533_2.00	Ostreococcus tauri	NNNNNRHNN	NNDYNNNNN	PBM Weirauch et al.(2014) pTH9457	0.672	0.487
fgeneshCV_pg.C_scaffold_18000164 M02534_2.00	Chlorella vulgaris	NNNNDYRAAH	DTTYRHNNNN	PBM Weirauch et al.(2014) pTH9252	0.672	0.487
BGIBMGA008956 M02524_2.00	Bombyx mori	AATTTAAAW	WTTTAAATT	PBM Weirauch et al.(2014) pTH9238	0.672	0.474
BRADI1G55710 M02525_2.00	Brachypodium distachyon	NVTBYRVABN	NVTBYRVABN	PBM Weirauch et al.(2014) pTH9241	0.672	0.474
GSPATT00010696001 M02530_2.00	Paramecium tetraurelia	NNBRAAHN	NDTTYVNN	PBM Weirauch et al.(2014) pTH8720	0.672	0.474
NEMVEDRAFT_v1g111410 M01320_2.00	Nematostella vectensis	NNNNYRWRN	NYWYRNNNN	PBM Lambert et al.(2019) pTH9771	0.672	0.474
XP_002124866.1 M01321_2.00	Ciona intestinalis	NDTTYRAAN	NTTYRAAHN	PBM Lambert et al.(2019) pTH9835	0.672	0.474
AT2G20110 M02520_2.00	Arabidopsis thaliana	DTTTAAAH	DTTTAAAH	PBM Weirauch et al.(2014) pTH7914	0.672	0.461
TCX5 M02523_2.00	Arabidopsis thaliana	NRTTCAAAYN	NRTTTGAAYN	PBM Weirauch et al.(2014) pTH8164	0.672	0.461
AT5G25790 M01319_2.00	Arabidopsis thaliana	NHYRAAHN	NDTTYRDN	PBM Lambert et al.(2019) pTH11533	0.672	0.461
lin54 M02526_2.00	Danio rerio	NHTYRAAH	DTTYRADN	PBM Weirauch et al.(2014) pTH8399	0.672	0.461
LIN54 M02527_2.00	Gallus gallus	NRTTYAAAH	DTTTRAAYN	PBM Weirauch et al.(2014) pTH8566	0.672	0.461
ENSTSYG00000005291 M02528_2.00	Tarsius syrichta	NNWDHDHWNN	NNWDHDHWNN	PBM Weirauch et al.(2014) pTH9366	0.672	0.461
GE12548 M02529_2.00	Drosophila yakuba	DTTYAAAY	RTTTRAAH	PBM Weirauch et al.(2014) pTH9262	0.672	0.461
AT2G20110 M07295_2.00	Arabidopsis thaliana	WWHWAADATTYAAAW	WTTTRAATHTTWDWW	Dap-seq OMalley et al.(2016) AT2G20110_col_a	0.672	0.461
AT2G20110 M07296_2.00	Arabidopsis thaliana	WWHNAAATTYAAAHN	NDTTTRAATTTNDWW	Dap-seq OMalley et al.(2016) AT2G20110_colamp_a	0.672	0.461
SPU_025306 M02531_2.00	Strongylocentrotus purpuratus	NNNNWYRAAH	DTTYRWNNNN	PBM Weirauch et al.(2014) pTH9286	0.672	0.447
TCX3 M01087_2.00	Arabidopsis thaliana	NNDTTYAAAH	DTTTRAAHNN	PBM Sullivan et al.(2014) pTH7218	0.672	0.434
TCX3 M02522_2.00	Arabidopsis thaliana	WTTYAAAH	DTTTRAAW	PBM Weirauch et al.(2014) pTH7421	0.672	0.434
PK27683.1 M01322_2.00	Cannabis sativa	NDTTYAAAH	DTTTRAAHN	PBM Lambert et al.(2019) pTH11347	0.672	0.434
TCX3 M07297_2.00	Arabidopsis thaliana	DWTTYRAAWTTBAAW	WTTVAAATTYRAAWH	Dap-seq OMalley et al.(2016) SOL1_colamp_a	0.672	0.434
TCX3 M07298_2.00	Arabidopsis thaliana	WTWWAAAATTYAAAW	WTTTRAATTTTWWAW	Dap-seq OMalley et al.(2016) SOL1_col	0.672	0.434
TCX2 M07300_2.00	Arabidopsis thaliana	WWTYVAAATTYRAAW	WTTYRAATTTBRAWW	Dap-seq OMalley et al.(2016) TCX2_col_a	0.672	0.434
TCX2 M07301_2.00	Arabidopsis thaliana	TTYVAAATTYRAAW	WTTYRAATTTBRAA	Dap-seq OMalley et al.(2016) TCX2_colamp_a	0.672	0.434
PK22848.1 M02532_2.00	Cannabis sativa	NNNYNAAATTTNN	NNAAATTTNRNNN	PBM Weirauch et al.(2014) pTH9724	0.672	0.421
TSO1 M07299_2.00	Arabidopsis thaliana	WWWTWDAAATTYAAA	TTTRAATTTHWAWWW	Dap-seq OMalley et al.(2016) TSO1_col_a	0.672	0.421
gw1.20.00.89.1 M02535_2.00	Ostreococcus tauri	WNYWBVWRNW	WNYWBVWRNW	PBM Weirauch et al.(2014) pTH9647	0.672	0.395
For this family, TFs with SR scores > 0.660* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OGLUM05G29120.1	TCR/CxC	7	44	RPKCSCVQSSCTQLYCRCFRSRYFCSDNCNCSGCYNIK
OGLUM05G29120.1	TCR/CxC	107	144	AKGCSCRKSKCSKLYCECFKNSVGCTAKCKCQECSNSF

Links
Other TCR/CxC family TFs
Other *Oryza glumaepatula* TFs

1213 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
30204.m001803	Ricinus communis	30204.m001803	N	0.000
AMTR_s00049p00034730	Amborella trichopoda	AMTR_s00049p00034730	N	0.000
Aquca_108_00003	Aquilegia coerulea	Aquca_108_00003	N	0.000
ABI3	Arabidopsis thaliana	AT3G24650	N	0.000
BGIOSGA000276	Oryza indica	BGIOSGA000276	N	0.000
Bo3g083650	Brassica oleracea	Bo3g083650	N	0.000
Bostr.19424s0154	Boechera stricta	Bostr.19424s0154	N	0.000
Bra013248	Brassica rapa	Bra013248	N	0.000
BRADI2G58390	Brachypodium distachyon	BRADI2G58390	N	0.000
Cagra.2774s0002	Capsella grandiflora	Cagra.2774s0002	N	0.000
Carubv10016094m.g	Capsella rubella	Carubv10016094m.g	N	0.000
cassava2971.m1	Manihot esculenta	cassava2971.m1	N	0.000
cassava34238.m1	Manihot esculenta	cassava34238.m1	N	0.000
Ca_21518	Cicer arietinum	Ca_21518	N	0.000
chr1.CM0147.220.nd	Lotus japonicus	chr1.CM0147.220.nd	N	0.000
Ciclev10019039m.g	Citrus clementina	Ciclev10019039m.g	N	0.000
Cla015213	Citrullus lanatus	Cla015213	N	0.000
Cucsa.078480	Cucumis sativus	Cucsa.078480	N	0.000
Eucgr.H00815	Eucalyptus grandis	Eucgr.H00815	N	0.000
evm.TU.supercontig_8.187	Carica papaya	evm.TU.supercontig_8.187	N	0.000
F775_43744	Aegilops tauschii	F775_43744	N	0.000
ABI3	Arabidopsis lyrata	fgenesh1_pg.C_scaffold_3002399	N	0.000
gene17562-v1.0-hybrid	Fragaria vesca	gene17562-v1.0-hybrid	N	0.000
GLYMA08G47240	Glycine max	GLYMA08G47240	N	0.000
GLYMA18G38490	Glycine max	GLYMA18G38490	N	0.000
Gorai.001G184300	Gossypium raimondii	Gorai.001G184300	N	0.000
GRMZM2G133398	Zea mays	GRMZM2G133398	N	0.000
GSMUA_Achr7G23040_001	Musa acuminata	GSMUA_Achr7G23040_001	N	0.000
GSMUA_AchrUn_randomG18520_001	Musa acuminata	GSMUA_AchrUn_randomG18520_001	N	0.000
LPERR01G35880	Leersia perrieri	LPERR01G35880	N	0.000
Lus10011888.g	Linum usitatissimum	Lus10011888.g	N	0.000
Lus10022820.g	Linum usitatissimum	Lus10022820.g	N	0.000
MDP0000166580	Malus domestica	MDP0000166580	N	0.000
MDP0000309680	Malus domestica	MDP0000309680	N	0.000
mgf023017m	Mimulus guttatus	mgf023017m	N	0.000
MLOC_69727	Hordeum vulgare	MLOC_69727	N	0.000
MTR_7g059330	Medicago truncatula	MTR_7g059330	N	0.000
OB01G50120	Oryza brachyantha	OB01G50120	N	0.000
OBART01G41410	Oryza barthii	OBART01G41410	N	0.000
OGLUM01G45580	Oryza glumaepatula	OGLUM01G45580	N	0.000
OLONG_001180	Oryza longistaminata	OLONG_001180	N	0.000
OMERI01G38380	Oryza meridionalis	OMERI01G38380	N	0.000
ONIVA01G46510	Oryza nivara	ONIVA01G46510	N	0.000
orange1.1g038867m.g	Citrus sinensis	orange1.1g038867m.g	N	0.000
ORGLA01G0353400	Oryza glaberrima	ORGLA01G0353400	N	0.000
ORUFI01G44750	Oryza rufipogon	ORUFI01G44750	N	0.000
VP1	Oryza sativa	OS01G0911700	N	0.000
Pavir.Ea03476	Panicum virgatum	Pavir.Ea03476	N	0.000
Pavir.J03563	Panicum virgatum	Pavir.J03563	N	0.000
PGSC0003DMG400020088	Solanum tuberosum	PGSC0003DMG400020088	N	0.000
PGSC0003DMG400020155	Solanum tuberosum	PGSC0003DMG400020155	N	0.000
Pm020417	Prunus mume	Pm020417	N	0.000
POPTR_0002s25330	Populus trichocarpa	POPTR_0002s25330	N	0.000
PRUPE_ppa001608mg	Prunus persica	PRUPE_ppa001608mg	N	0.000
SapurV1A.0937s0080	Salix purpurea	SapurV1A.0937s0080	N	0.000
Sb03g043480	Sorghum bicolor	Sb03g043480	N	0.000
Si000497m.g	Setaria italica	Si000497m.g	N	0.000
Solyc06g083600.1	Solanum lycopersicum	Solyc06g083600.1	N	0.000
TCM_003056	Theobroma cacao	TCM_003056	N	0.000
Thhalv10003110m.g	Eutrema salsugineum	Thhalv10003110m.g	N	0.000
TRAES3BF066400010CFD_g	Triticum aestivum	TRAES3BF066400010CFD_g	N	0.000
ABI3	Vitis vinifera	VIT_07s0005g05400	N	0.000

OGLUM05G29120 (Oryza glumaepatula) TCR/CxC

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1213 Related TFs

OGLUM05G29120 **(Oryza glumaepatula)
TCR/CxC**