WRKY40 (Arabidopsis lyrata)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03106 (WRKY) IPR003657 fgenesh2_kg.2__2291__AT1G80840.1 T352573_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY40
M02548_2.00 		Arabidopsis thaliana
NRGTCAWN
NWTGACYN		 PBM
Weirauch et al.(2014)
pTH8398 		0.897 1.000
WRKY40
M07379_2.00 		Arabidopsis thaliana
NNNAAAGTCAAVR
YBTTGACTTTNNN		 Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a 		0.897 1.000
WRKY40
M07380_2.00 		Arabidopsis thaliana
NNVAAAGTCAAVRNH
DNYBTTGACTTTBNN		 Dap-seq
OMalley et al.(2016)
WRKY40_col 		0.897 1.000
WRKY40
M08180_2.00 		Arabidopsis thaliana
NNAGTCAANN
NNTTGACTNN		 ChIP-seq
Mathelier et al.(2014)
MA1085.2 		0.897 1.000
WRKY60
M02551_2.00 		Arabidopsis thaliana
NYGGTCAAMNN
NNKTTGACCRN		 PBM
Weirauch et al.(2014)
pTH7379 		0.865 0.814
WRKY18
M02560_2.00 		Arabidopsis thaliana
NNRGTCAANN
NNTTGACYNN		 PBM
Weirauch et al.(2014)
pTH7360 		0.862 0.831
WRKY18
M00900_2.00 		Arabidopsis thaliana
NVGTCNN
NNGACBN		 PBM
Franco-Zorrilla et al.(2014)
WRKY18 		0.862 0.831
WRKY18
M07416_2.00 		Arabidopsis thaliana
NNHRGTCAASR
YSTTGACYDNN		 Dap-seq
OMalley et al.(2016)
WRKY18_col_a 		0.862 0.831
WRKY18
M07417_2.00 		Arabidopsis thaliana
NNNHWAGTCAANR
YNTTGACTWDNNN		 Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a 		0.862 0.831
WRKY18
M11465_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRKY18_Q2 		0.862 0.831
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__2291__AT1G80840.1 WRKY 146 204

Links

Other WRKY family TFs
Other Arabidopsis lyrata TFs

599 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R011605 Calypte anna Aan_R011605 I
Afo_R007931 Aptenodytes forsteri Afo_R007931 I
Alligator_sinensis_CCG008004.1 Alligator sinensis Alligator_sinensis_CCG008004.1 I
Aqu1.225687 Amphimedon queenslandica Aqu1.225687 N
Aqu1.225688 Amphimedon queenslandica Aqu1.225688 N
Brh_R011254 Buceros rhinoceros Brh_R011254 I
Cmyd_10007892 Chelonia mydas Cmyd_10007892 I
ENSAMEG00000010932 Ailuropoda melanoleuca ENSAMEG00000010932 I
ENSAPLG00000001773 Anas platyrhynchos ENSAPLG00000001773 I
ATF4 Bos taurus ENSBTAG00000017462 I
ENSBTAP00000023213-D1 Bos grunniens ENSBTAP00000023213-D1 I
ATF4 Canis familiaris ENSCAFG00000001324 I
ATF4 Choloepus hoffmanni ENSCHOG00000008739 I
ATF4 Callithrix jacchus ENSCJAG00000002594 I
ATF4 Cavia porcellus ENSCPOG00000022485 I
ENSCSAG00000006330 Chlorocebus sabaeus ENSCSAG00000006330 I
ENSDNOG00000030854 Dasypus novemcinctus ENSDNOG00000030854 I
ENSDNOG00000046837 Dasypus novemcinctus ENSDNOG00000046837 I
Atf4 Dipodomys ordii ENSDORG00000004952 I
ATF4 Equus caballus ENSECAG00000006931 I
ENSFALG00000012313 Ficedula albicollis ENSFALG00000012313 I
ATF4 Felis catus ENSFCAG00000009288 I
ATF4 Homo sapiens ENSG00000128272 D
ATF4 Gallus gallus ENSGALG00000012135 I
ENSGGOG00000010115 Gorilla gorilla ENSGGOG00000010115 I
ENSLACG00000003943 Latimeria chalumnae ENSLACG00000003943 I
ATF4 Loxodonta africana ENSLAFG00000012020 I
ENSMEUG00000011209 Macropus eugenii ENSMEUG00000011209 I
ENSMICG00000011448 Microcebus murinus ENSMICG00000011448 I
ENSMLUG00000027798 Myotis lucifugus ENSMLUG00000027798 I
ENSMMUG00000004499 Macaca mulatta ENSMMUG00000004499 I
ATF4 Monodelphis domestica ENSMODG00000009380 I
ENSMPUG00000009865 Mustela putorius furo ENSMPUG00000009865 I
ENSMPUG00000013386 Mustela putorius furo ENSMPUG00000013386 I
Atf4 Mus musculus ENSMUSG00000042406 D
ENSNLEG00000015257 Nomascus leucogenys ENSNLEG00000015257 I
ATF4 Ornithorhynchus anatinus ENSOANG00000011026 I
ENSOARG00000016775 Ovis aries ENSOARG00000016775 I
ATF4 Otolemur garnettii ENSOGAG00000033566 I
ENSP00000384587 Macaca fascicularis ENSP00000384587 I
ENSPANG00000025194 Papio anubis ENSPANG00000025194 I
ATF4 Procavia capensis ENSPCAG00000004089 I
ENSPPYG00000011842 Pongo abelii ENSPPYG00000011842 I
ENSPSIG00000011085 Pelodiscus sinensis ENSPSIG00000011085 I
ATF4 Pan troglodytes ENSPTRG00000014398 I
ATF4 Pteropus vampyrus ENSPVAG00000015476 I
Atf4 Rattus norvegicus ENSRNOG00000017801 I
ENSSHAG00000014069 Sarcophilus harrisii ENSSHAG00000014069 I
ATF4 Sus scrofa ENSSSCG00000000084 I
ENSSTOG00000025355 Ictidomys tridecemlineatus ENSSTOG00000025355 I
ATF4 Tupaia belangeri ENSTBEG00000005052 I
ATF4 Taeniopygia guttata ENSTGUG00000010225 I
ATF4 Tursiops truncatus ENSTTRG00000014581 I
Gfo_R004722 Geospiza fortis Gfo_R004722 I
HelroG147362 Helobdella robusta HelroG147362 N
Myotis_brandtii_ATF4_10014009 Myotis brandtii Myotis_brandtii_ATF4_10014009 I
Ogr14426 Ophisaurus gracilis Ogr14426 I
Pvit_04694 Pogona vitticeps Pvit_04694 I
Tal_R009484 Tyto alba Tal_R009484 I