CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Carubv10006884m.g *(Capsella rubella)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03106 (WRKY)	IPR003657	Carubv10006884m.g	T355953_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY53 M01090_2.00	Arabidopsis thaliana	RGTCAACNN	NNGTTGACY	PBM Sullivan et al.(2014) pTH8245	0.887	0.983
WRKY30 M02563_2.00	Arabidopsis thaliana	RGTCAACNNN	NNNGTTGACY	PBM Weirauch et al.(2014) pTH7611	0.850	0.712
WRKY30 M07422_2.00	Arabidopsis thaliana	DAAGTCAACGN	NCGTTGACTTH	Dap-seq OMalley et al.(2016) WRKY30_col_a	0.850	0.712
WRKY30 M07423_2.00	Arabidopsis thaliana	NNAAGTCAACGNH	DNCGTTGACTTNN	Dap-seq OMalley et al.(2016) WRKY30_colamp_a	0.850	0.712
WRKY55 M07392_2.00	Arabidopsis thaliana	HWAGTCAACGNH	DNCGTTGACTWD	Dap-seq OMalley et al.(2016) WRKY55_col_a	0.829	0.678
WRKY70 M07399_2.00	Arabidopsis thaliana	HAAAGTCAACGNN	NNCGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY70_col	0.820	0.610
WRKY46 M07395_2.00	Arabidopsis thaliana	VAAAGTCAAMG	CKTTGACTTTB	Dap-seq OMalley et al.(2016) WRKY46_col_a	0.817	0.644
WRKY46 M07396_2.00	Arabidopsis thaliana	HRAAGTCAACG	CGTTGACTTYD	Dap-seq OMalley et al.(2016) WRKY46_colamp_a	0.817	0.644
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Carubv10006884m	WRKY	154	214	DDVYSWRKYGQKDILGAKFPRSYYRCTHRSTQNCWATKQVQRSDGDATVFEVTYRGTHTCS

Links
Other WRKY family TFs
Other *Capsella rubella* TFs

520 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
DILT_0001004901	Diphyllobothrium latum	DILT_0001004901	N
EmuJ_000419500	Echinococcus multilocularis	EmuJ_000419500	N
PXEA_0002198701	Protopolystoma xenopodis	PXEA_0002198701	N
SCUD_0000710001	Schistosoma curassoni	SCUD_0000710001	N
Sjc_0040590	Schistosoma japonicum	Sjc_0040590	N
Smp_073680	Schistosoma mansoni	Smp_073680	N
SMRZ_0000513201	Schistosoma margrebowiei	SMRZ_0000513201	N
SMTD_0001467001	Schistosoma mattheei	SMTD_0001467001	N
SROB_0001853501	Schistosoma rodhaini	SROB_0001853501	N
SSLN_0000810201	Schistocephalus solidus	SSLN_0000810201	N
T265_05686	Opisthorchis viverrini	T265_05686	N
TRE_0001104801	Trichobilharzia regenti	TRE_0001104801	N
TsM_000321300	Taenia solium	TsM_000321300	N