CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Gorai.008G137900 *(Gossypium raimondii)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03106 (WRKY)	IPR003657	Gorai.008G137900	T356310_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY48 M02565_2.00	Arabidopsis thaliana	NNVGTCADNN	NNHTGACBNN	PBM Weirauch et al.(2014) pTH7552	0.861	0.828
WRKY28 M07406_2.00	Arabidopsis thaliana	HAAAGTCAAMNNH	DNNKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY28_col_a	0.860	0.828
WRKY28 M07407_2.00	Arabidopsis thaliana	VAAAGTCAAMG	CKTTGACTTTB	Dap-seq OMalley et al.(2016) WRKY28_colamp_a	0.860	0.828
WRKY8 M02564_2.00	Arabidopsis thaliana	NRGTCAAHN	NDTTGACYN	PBM Weirauch et al.(2014) pTH7554	0.860	0.793
WRKY8 M07428_2.00	Arabidopsis thaliana	NAAAAGTCAACRNHW	WDNYGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY8_colamp_a	0.860	0.793
WRKY8 M07429_2.00	Arabidopsis thaliana	NNVAAAGTCAACRNH	DNYGTTGACTTTBNN	Dap-seq OMalley et al.(2016) WRKY8_col	0.860	0.793
WRKY23 M02556_2.00	Arabidopsis thaliana	RGTCAACG	CGTTGACY	PBM Weirauch et al.(2014) pTH7387	0.858	0.897
WRKY23 M01089_2.00	Arabidopsis thaliana	NRGTCAAM	KTTGACYN	PBM Sullivan et al.(2014) pTH7671	0.858	0.897
WRKY57 M02547_2.00	Arabidopsis thaliana	NNRGTCAAHN	NDTTGACYNN	PBM Weirauch et al.(2014) pTH7917	0.857	0.828
WRKY71 M07374_2.00	Arabidopsis thaliana	HAAAGTCAAMN	NKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY71_col_a	0.857	0.845
WRKY21 M02553_2.00	Arabidopsis thaliana	NNRGTCAAMN	NKTTGACYNN	PBM Weirauch et al.(2014) pTH7422	0.850	0.552
WRKY21 M07389_2.00	Arabidopsis thaliana	HAAAGTCAACNNH	DNNGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_colamp_a	0.850	0.552
WRKY21 M07390_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_col	0.850	0.552
WRKY75 M02562_2.00	Arabidopsis thaliana	NRGTCAAM	KTTGACYN	PBM Weirauch et al.(2014) pTH8821	0.837	0.724
WRKY75 M07420_2.00	Arabidopsis thaliana	NAAAGTCAACGNH	DNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY75_col_a	0.837	0.724
WRKY75 M07421_2.00	Arabidopsis thaliana	VAAAGTCAACRNH	DNYGTTGACTTTB	Dap-seq OMalley et al.(2016) WRKY75_colamp_a	0.837	0.724
ZAP1 M00982_2.00	Arabidopsis thaliana	NRGTCAAN	NTTGACYN	PBM Lindemose et al.(2014) WRKY1	0.835	0.655
WRKY14 M00731_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Chang et al.(2013) pTH7570	0.830	0.569
WRKY14 M07375_2.00	Arabidopsis thaliana	NAAAGTCAACGNN	NNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_col_a	0.830	0.569
WRKY14 M07376_2.00	Arabidopsis thaliana	NAAAGTCAACGNH	DNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_colamp_a	0.830	0.569
WRKY45 M00899_2.00	Arabidopsis thaliana	NNRGTCAAMGN	NCKTTGACYNN	PBM Franco-Zorrilla et al.(2014) WRKY45	0.828	0.690
WRKY45 M07397_2.00	Arabidopsis thaliana	NAAAAGTCAAMD	HKTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY45_col_a	0.828	0.690
WRKY45 M07398_2.00	Arabidopsis thaliana	MAAAGTCAAMV	BKTTGACTTTK	Dap-seq OMalley et al.(2016) WRKY45_colamp_a	0.828	0.690
WRKY43 M02555_2.00	Arabidopsis thaliana	NRGTCAAHNN	NNDTTGACYN	PBM Weirauch et al.(2014) pTH7373	0.827	0.707
WRKY43 M07393_2.00	Arabidopsis thaliana	NNAAAGTCAACGNN	NNCGTTGACTTTNN	Dap-seq OMalley et al.(2016) WRKY43_col_a	0.827	0.707
WRKY43 M07394_2.00	Arabidopsis thaliana	NNNNAAAGTCAACGN	NCGTTGACTTTNNNN	Dap-seq OMalley et al.(2016) WRKY43_colamp_a	0.827	0.707
WRKY27 M02566_2.00	Arabidopsis thaliana	NNGTCHDNN	NNHDGACNN	PBM Weirauch et al.(2014) pTH8188	0.827	0.569
WRKY27 M07430_2.00	Arabidopsis thaliana	MAAAGTCAACKNH	DNMGTTGACTTTK	Dap-seq OMalley et al.(2016) WRKY27_col_a	0.827	0.569
WRKY27 M07431_2.00	Arabidopsis thaliana	HAAAGTCAACKNH	DNMGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY27_colamp_a	0.827	0.569
WRKY65 M07372_2.00	Arabidopsis thaliana	NWWAGTCAACG	CGTTGACTWWN	Dap-seq OMalley et al.(2016) WRKY65_col_a	0.825	0.534
WRKY65 M07373_2.00	Arabidopsis thaliana	NAAAGTCAACGN	NCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY65_colamp_a	0.825	0.534
WRKY24 M07426_2.00	Arabidopsis thaliana	NNNAWAGTCAACGN	NCGTTGACTWTNNN	Dap-seq OMalley et al.(2016) WRKY24_col_a	0.823	0.690
WRKY24 M07427_2.00	Arabidopsis thaliana	NAWAGTCAACGNH	DNCGTTGACTWTN	Dap-seq OMalley et al.(2016) WRKY24_colamp_a	0.823	0.690
WRKY12 M00898_2.00	Arabidopsis thaliana	NHGGTCAACNN	NNGTTGACCDN	PBM Franco-Zorrilla et al.(2014) WRKY12	0.820	0.672
Q40828_PETCR M11467_2.00	Petroselinum crispum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY_Q2	0.819	0.517
WRKY22 M02557_2.00	Arabidopsis thaliana	NNNKTMHDNN	NNHDKAMNNN	PBM Weirauch et al.(2014) pTH7320	0.818	0.500
WRKY22 M07400_2.00	Arabidopsis thaliana	AAAAGTCAACKNH	DNMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY22_colamp_a	0.818	0.500
WRKY22 M07401_2.00	Arabidopsis thaliana	NAAAGTCAACKNH	DNMGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY22_col	0.818	0.500
WRKY15 M02549_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Weirauch et al.(2014) pTH7602	0.818	0.534
WRKY15 M07383_2.00	Arabidopsis thaliana	AAAAGTCAACKN	NMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY15_colamp_a	0.818	0.534
WRKY15 M07384_2.00	Arabidopsis thaliana	NWAAGTCAACB	VGTTGACTTWN	Dap-seq OMalley et al.(2016) WRKY15_col_b	0.818	0.534
WRKY11 M02559_2.00	Arabidopsis thaliana	NDGTCAAHNN	NNDTTGACHN	PBM Weirauch et al.(2014) pTH8091	0.818	0.517
WRKY11 M07415_2.00	Arabidopsis thaliana	NHAAAGTCAACBNH	DNVGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY11_col_a	0.818	0.517
WRKY11 M11464_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY11_Q2	0.818	0.517
WRKY17 M02550_2.00	Arabidopsis thaliana	NNDGTCAAHN	NDTTGACHNN	PBM Weirauch et al.(2014) pTH8088	0.814	0.500
WRKY17 M07385_2.00	Arabidopsis thaliana	NHAAAGTCAACRNN	NNYGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY17_col_a	0.814	0.500
WRKY17 M07386_2.00	Arabidopsis thaliana	NMAAAGTCAACGN	NCGTTGACTTTKN	Dap-seq OMalley et al.(2016) WRKY17_colamp_a	0.814	0.500
WRKY29 M02558_2.00	Arabidopsis thaliana	NNNGTCHDNN	NNHDGACNNN	PBM Weirauch et al.(2014) pTH9604	0.812	0.500
WRKY29 M07410_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY29_col_a	0.812	0.500
WRKY29 M07411_2.00	Arabidopsis thaliana	HWWAGTCAAMDNN	NNHKTTGACTWWD	Dap-seq OMalley et al.(2016) WRKY29_colamp_a	0.812	0.500
WRKY7 M07412_2.00	Arabidopsis thaliana	NNDDDNNNNMAAAGTCAACGV	BCGTTGACTTTKNNNNHHHNN	Dap-seq OMalley et al.(2016) WRKY7_colamp_a	0.812	0.500
WRKY7 M07413_2.00	Arabidopsis thaliana	NAAAAGTCAACKNN	NNMGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY7_col	0.812	0.500
WRKY50 M07424_2.00	Arabidopsis thaliana	NNAAAAGTCAAMN	NKTTGACTTTTNN	Dap-seq OMalley et al.(2016) WRKY50_col_a	0.811	0.638
WRKY50 M07425_2.00	Arabidopsis thaliana	NWAAGTCAANN	NNTTGACTTWN	Dap-seq OMalley et al.(2016) WRKY50_colamp_a	0.811	0.638
WRKY31 M07408_2.00	Arabidopsis thaliana	NNNNHNNNNNDRGTCAACG	CGTTGACYHNNNNNDNNNN	Dap-seq OMalley et al.(2016) WRKY31_col_a	0.811	0.603
WRKY31 M07409_2.00	Arabidopsis thaliana	NHWRGTCAACKNH	DNMGTTGACYWDN	Dap-seq OMalley et al.(2016) WRKY31_colamp_a	0.811	0.603
WRKY6 M07377_2.00	Arabidopsis thaliana	DNNNHNDHNHNRGTCAACG	CGTTGACYNDNDHNDNNNH	Dap-seq OMalley et al.(2016) WRKY6_col_a	0.811	0.603
WRKY6 M07378_2.00	Arabidopsis thaliana	NNHNWRGTCAACKNH	DNMGTTGACYWNDNN	Dap-seq OMalley et al.(2016) WRKY6_colamp_a	0.811	0.603
PK25870.1 M01325_2.00	Cannabis sativa	NRGTCAAM	KTTGACYN	PBM Lambert et al.(2019) pTH10156	0.811	0.638
WRKY42 M07404_2.00	Arabidopsis thaliana	NDWRGTCAACDNNNNDNNHNN	NNDNNHNNNNHGTTGACYWHN	Dap-seq OMalley et al.(2016) WRKY42_col_a	0.809	0.586
WRKY42 M07405_2.00	Arabidopsis thaliana	HNDNNNWRGTCAACKNHNDD	HHNDNMGTTGACYWNNNHND	Dap-seq OMalley et al.(2016) WRKY42_colamp_a	0.809	0.586
WRKY47 M00732_2.00	Arabidopsis thaliana	NNRGTCAACKN	NMGTTGACYNN	PBM Chang et al.(2013) pTH7913	0.808	0.586
WRKY47 M07402_2.00	Arabidopsis thaliana	WRGTCAAMGNHVDK	MHBDNCKTTGACYW	Dap-seq OMalley et al.(2016) WRKY47_col_a	0.808	0.586
WRKY47 M07403_2.00	Arabidopsis thaliana	NNNHWRGTCAACKNHNNNN	NNNNDNMGTTGACYWDNNN	Dap-seq OMalley et al.(2016) WRKY47_colamp_a	0.808	0.586
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Gorai.008G137900.1	WRKY	160	217	EDGYRWRKYGQKAVKNSPFPRSYYRCTSTSCNVKKRVERCFTDPSIVVTTYEGQHTHP
Gorai.008G137900.2	WRKY	70	127	EDGYRWRKYGQKAVKNSPFPRSYYRCTSTSCNVKKRVERCFTDPSIVVTTYEGQHTHP

Links
Other WRKY family TFs
Other *Gossypium raimondii* TFs

2547 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aan_R007110	Calypte anna	Aan_R007110	I
Aan_R013126	Calypte anna	Aan_R013126	I
Afo_R011902	Aptenodytes forsteri	Afo_R011902	I
Alligator_sinensis_CCG016013.1	Alligator sinensis	Alligator_sinensis_CCG016013.1	I
Brh_R008138	Buceros rhinoceros	Brh_R008138	I
CapteG154409	Capitella teleta	CapteG154409	I
CGI_10019731	Crassostrea gigas	CGI_10019731	I
Cmyd_10020111	Chelonia mydas	Cmyd_10020111	I
csin104676	Clonorchis sinensis	csin104676	I
DI09_49p90	Microsporidia sp	DI09_49p90	I
DI09_67p120	Microsporidia sp	DI09_67p120	I
ECANG7_07925	Echinococcus canadensis	ECANG7_07925	I
FOXI1	Anolis carolinensis	ENSACAG00000015950	I
ENSAMEG00000001516	Ailuropoda melanoleuca	ENSAMEG00000001516	I
ENSAMXG00000005839	Astyanax mexicanus	ENSAMXG00000005839	I
ENSAMXG00000008393	Astyanax mexicanus	ENSAMXG00000008393	I
ENSAMXG00000012362	Astyanax mexicanus	ENSAMXG00000012362	I
ENSAPLG00000012296	Anas platyrhynchos	ENSAPLG00000012296	I
FOXI1	Bos taurus	ENSBTAG00000014620	I
ENSBTAP00000050534-D2	Bos grunniens	ENSBTAP00000050534-D2	I
FOXI1	Canis familiaris	ENSCAFG00000016968	I
foxi-a	Ciona intestinalis	ENSCING00000007221	I
FOXI1	Callithrix jacchus	ENSCJAG00000011646	I
ENSCSAG00000010076	Chlorocebus sabaeus	ENSCSAG00000010076	I
ENSCSAVG00000005989	Ciona savignyi	ENSCSAVG00000005989	I
foxi3b	Danio rerio	ENSDARG00000009550	I
foxi3a	Danio rerio	ENSDARG00000055926	I
FOXI1	Dasypus novemcinctus	ENSDNOG00000007480	I
ENSFALG00000009556	Ficedula albicollis	ENSFALG00000009556	I
FOXI1	Felis catus	ENSFCAG00000000835	I
FOXI1	Homo sapiens	ENSG00000168269	D
foxi3a	Gasterosteus aculeatus	ENSGACG00000018474	I
FOXI1	Gallus gallus	ENSGALG00000002105	I
FOXI1	Gorilla gorilla	ENSGGOG00000015780	I
ENSGMOG00000001944	Gadus morhua	ENSGMOG00000001944	I
ENSLACG00000017904	Latimeria chalumnae	ENSLACG00000017904	I
FOXI1	Loxodonta africana	ENSLAFG00000026591	I
ENSMEUG00000000316	Macropus eugenii	ENSMEUG00000000316	I
FOXI1	Meleagris gallopavo	ENSMGAG00000002015	I
FOXI1	Microcebus murinus	ENSMICG00000012575	I
FOXI1	Myotis lucifugus	ENSMLUG00000027832	I
FOXI1	Macaca mulatta	ENSMMUG00000014124	I
FOXI1	Monodelphis domestica	ENSMODG00000006890	I
ENSMPUG00000012982	Mustela putorius furo	ENSMPUG00000012982	I
Foxi1	Mus musculus	ENSMUSG00000047861	D
ENSNLEG00000005109	Nomascus leucogenys	ENSNLEG00000005109	I
ENSOARG00000003151	Ovis aries	ENSOARG00000003151	I
FOXI1	Oryctolagus cuniculus	ENSOCUG00000000836	I
FOXI1	Otolemur garnettii	ENSOGAG00000032689	I
ENSONIG00000017618	Oreochromis niloticus	ENSONIG00000017618	I
ENSP00000304286	Macaca fascicularis	ENSP00000304286	I
ENSPANG00000013256	Papio anubis	ENSPANG00000013256	I
FOXI1	Procavia capensis	ENSPCAG00000006657	I
ENSPFOG00000015741	Poecilia formosa	ENSPFOG00000015741	I
ENSPMAG00000009377	Petromyzon marinus	ENSPMAG00000009377	I
ENSPPYG00000016029	Pongo abelii	ENSPPYG00000016029	I
ENSPSIG00000009562	Pelodiscus sinensis	ENSPSIG00000009562	I
FOXI1	Pan troglodytes	ENSPTRG00000017514	I
FOXI1	Pteropus vampyrus	ENSPVAG00000005974	I
Foxi1	Rattus norvegicus	ENSRNOG00000006293	I
ENSSHAG00000018578	Sarcophilus harrisii	ENSSHAG00000018578	I
FOXI1	Sus scrofa	ENSSSCG00000017009	I
ENSSTOG00000016524	Ictidomys tridecemlineatus	ENSSTOG00000016524	I
FOXI1	Tupaia belangeri	ENSTBEG00000000162	I
FOXI1	Taeniopygia guttata	ENSTGUG00000001568	I
foxi3a	Tetraodon nigroviridis	ENSTNIG00000017058	I
foxi3a	Takifugu rubripes	ENSTRUG00000007060	I
FOXJ3	Takifugu rubripes	ENSTRUG00000014404	I
FOXI1	Tursiops truncatus	ENSTTRG00000002178	I
ENSXMAG00000010462	Xiphophorus maculatus	ENSXMAG00000010462	I
estExt_fgeneshPB_pg.C_170198	Phycomyces blakesleeanus	estExt_fgeneshPB_pg.C_170198	I
e_gw1.1.1225.1	Mucor circinelloides	e_gw1.1.1225.1	I
fgeneshPB_pg.18__185	Phycomyces blakesleeanus	fgeneshPB_pg.18__185	N
fgeneshPB_pg.6__357	Phycomyces blakesleeanus	fgeneshPB_pg.6__357	I
Gfo_R011197	Geospiza fortis	Gfo_R011197	I
GLOINDRAFT_349666	Rhizophagus irregularis	GLOINDRAFT_349666	I
GLOINDRAFT_41548	Rhizophagus irregularis	GLOINDRAFT_41548	I
GLOINDRAFT_82873	Rhizophagus irregularis	GLOINDRAFT_82873	I
gw1.13.252.1	Mucor circinelloides	gw1.13.252.1	I
gw1.9.461.1	Mucor circinelloides	gw1.9.461.1	I
ISCW017832	Ixodes scapularis	ISCW017832	I
L889_g29810	Steinernema feltiae	L889_g29810	I
M896_121210	Ordospora colligata	M896_121210	I
MCOS_0000744701	Mesocestoides corti	MCOS_0000744701	I
ML154122a	Mnemiopsis leidyi	ML154122a	I
Myotis_brandtii_FOXI1_10007902	Myotis brandtii	Myotis_brandtii_FOXI1_10007902	I
Ogr15673	Ophisaurus gracilis	Ogr15673	I
PFL1_06663	Pseudozyma flocculosa	PFL1_06663	I
Pvit_09672	Pogona vitticeps	Pvit_09672	I
RO3G_07238	Rhizopus oryzae	RO3G_07238	I
Tal_R009461	Tyto alba	Tal_R009461	I
TASK_0000593301	Taenia asiatica	TASK_0000593301	I
TsM_000087000	Taenia solium	TsM_000087000	I
foxi4.2	Xenopus tropicalis	XB-GENE-487658	I
foxi1	Xenopus tropicalis	XB-GENE-494125	I
foxi1.L	Xenopus laevis	XB-GENE-494129	I
foxi4.2.L	Xenopus laevis	XB-GENE-6252155	I

Gorai.008G137900 (Gossypium raimondii) WRKY

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

2547 Related TFs

Gorai.008G137900 **(Gossypium raimondii)
WRKY**