4509_YDR207C (Saccharomyces paradoxus)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 4509_YDR207C T390852_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
UME6
M00081_2.00 		Saccharomyces cerevisiae
NDHCDHGDHN
NDHCDHGDHN		 PBM
Badis et al.(2008)
UME6_2040 		0.683 1.000
UME6
M01575_2.00 		Saccharomyces cerevisiae
VGCGSNWNN
NNWNSCGCB		 PBM
Zhu et al.(2009)
Ume6 		0.683 1.000
UME6
M08653_2.00 		Saccharomyces cerevisiae
NSGCGGYWV
BWRCCGCSN		 Misc
DeBoer et al.(2011)
YDR207C_511 		0.683 1.000
UME6
M08468_2.00 		Saccharomyces cerevisiae
TSGGCGGCTAWWT
AWWTAGCCGCCSA		 COMPILED
Mathelier et al.(2014)
MA0412.1 		0.683 1.000
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
4509_YDR207C Zinc cluster 772 809

Links

Other Zinc cluster family TFs
Other Saccharomyces paradoxus TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0000014001 Angiostrongylus costaricensis ACOC_0000014001 N
ANCCEY_02021 Ancylostoma ceylanicum ANCCEY_02021 N
genemark-nMf.1.1.scaf00498-processed-gene-0.6 Meloidogyne floridensis genemark-nMf.1.1.scaf00498-processed-gene-0.6 N
HCOI01917800 Haemonchus contortus HCOI01917800 N
NBR_0000032501 Nippostrongylus brasiliensis NBR_0000032501 N
PPA23063 Pristionchus pacificus PPA23063 N