Bo6g029320 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo6g029320 T000857_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF8
M01608_2.00 		Arabidopsis thaliana
MGCCGNMNNN
NNNKNCGGCK		 PBM
Weirauch et al.(2014)
pTH8095 		0.725 0.784
ERF8
M06586_2.00 		Arabidopsis thaliana
NYHDYCKCCGCCGYH
DRCGGCGGMGRHDRN		 Dap-seq
OMalley et al.(2016)
ERF8_col_a 		0.725 0.784
ERF8
M06587_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYCRHHDN
NHDDYGRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ERF8_colamp_a 		0.725 0.784
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.710 0.725
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.710 0.725
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.708 0.745
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.708 0.745
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.702 0.725
PK17878.1
M01099_2.00 		Cannabis sativa
CGCCGYCR
YGRCGGCG		 PBM
Lambert et al.(2019)
pTH10133 		0.692 0.725
ERF11
M01606_2.00 		Arabidopsis thaliana
NHGCCGNHNN
NNDNCGGCDN		 PBM
Weirauch et al.(2014)
pTH8117 		0.692 0.804
ERF11
M06575_2.00 		Arabidopsis thaliana
NHNNHDSCGCCGYCRHHNNN
NNNDDYGRCGGCGSHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF11_colamp_a 		0.692 0.804
ERF11
M06576_2.00 		Arabidopsis thaliana
NHNYCKCCGCCGYHD
HDRCGGCGGMGRNDN		 Dap-seq
OMalley et al.(2016)
ERF11_col_b 		0.692 0.804
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.681 0.745
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.681 0.745
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.681 0.745
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g029320.1 AP2 20 71

Links

Other AP2 family TFs
Other Brassica oleracea TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HES5 Homo sapiens ENSG00000197921 D
Hes5 Mus musculus ENSMUSG00000048001 D
ENSAPLG00000007967 Anas platyrhynchos ENSAPLG00000007967 I
Aan_R005913 Calypte anna Aan_R005913 I
Afo_R003314 Aptenodytes forsteri Afo_R003314 I
HES5 Tursiops truncatus ENSTTRG00000003782 I
Alligator_sinensis_CCG011591.1 Alligator sinensis Alligator_sinensis_CCG011591.1 I
Brh_R011663 Buceros rhinoceros Brh_R011663 I
ENSSHAG00000014397 Sarcophilus harrisii ENSSHAG00000014397 I
Hes5 Rattus norvegicus ENSRNOG00000013850 I
HES5 Pan troglodytes ENSPTRG00000024233 I
HES5 Procavia capensis ENSPCAG00000001025 I
ENSPANG00000022730 Papio anubis ENSPANG00000022730 I
HES5 Otolemur garnettii ENSOGAG00000030950 I
ENSOARG00000018071 Ovis aries ENSOARG00000018071 I
HES5 Monodelphis domestica ENSMODG00000008212 I
HES5 Bos taurus ENSBTAG00000002483 I
ENSMEUG00000013913 Macropus eugenii ENSMEUG00000013913 I
HES5 Canis familiaris ENSCAFG00000019421 I
HES5 Gorilla gorilla ENSGGOG00000010276 I
HES5 Gallus gallus ENSGALG00000001141 I
Tal_R007855 Tyto alba Tal_R007855 I
HES5 Callithrix jacchus ENSCJAG00000002549 I
ENSMMUG00000014688 Macaca mulatta ENSMMUG00000014688 I
ENSCPOG00000027139 Cavia porcellus ENSCPOG00000027139 I
HES5 Erinaceus europaeus ENSEEUG00000008377 I
ENSCSAG00000000715 Chlorocebus sabaeus ENSCSAG00000000715 I
Cmyd_10015932 Chelonia mydas Cmyd_10015932 N
hes8 Xenopus tropicalis XB-GENE-5952810 N
Alligator_sinensis_CCG011593.1 Alligator sinensis Alligator_sinensis_CCG011593.1 N
ENSAPLG00000007688 Anas platyrhynchos ENSAPLG00000007688 N
Gfo_R009738 Geospiza fortis Gfo_R009738 N
Gfo_R009739 Geospiza fortis Gfo_R009739 N
Tal_R007854 Tyto alba Tal_R007854 N
Pvit_15591 Pogona vitticeps Pvit_15591 N
Tal_R007853 Tyto alba Tal_R007853 N
Afo_R003312 Aptenodytes forsteri Afo_R003312 N
Aan_R005911 Calypte anna Aan_R005911 N
ENSTGUG00000016560 Taeniopygia guttata ENSTGUG00000016560 N
ENSTGUG00000002875 Taeniopygia guttata ENSTGUG00000002875 N
ENSSHAG00000014651 Sarcophilus harrisii ENSSHAG00000014651 N
ENSPSIG00000014816 Pelodiscus sinensis ENSPSIG00000014816 N
ENSPSIG00000004060 Pelodiscus sinensis ENSPSIG00000004060 N
ENSPSIG00000004046 Pelodiscus sinensis ENSPSIG00000004046 N
ENSMODG00000008220 Monodelphis domestica ENSMODG00000008220 N
ENSMGAG00000001983 Meleagris gallopavo ENSMGAG00000001983 N
ENSMEUG00000001942 Macropus eugenii ENSMEUG00000001942 N
ENSGALG00000001136 Gallus gallus ENSGALG00000001136 N
ENSFALG00000009565 Ficedula albicollis ENSFALG00000009565 N