CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

BRADI4G29010 *(Brachypodium distachyon)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	BRADI4G29010	T001356_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RAP2-4 M01612_2.00	Arabidopsis thaliana	NRCCGHCMNN	NNKGDCGGYN	PBM Weirauch et al.(2014) pTH8092	0.851	0.960
ERF055 M06577_2.00	Arabidopsis thaliana	NHDYCACCGHCMHH	DDKGDCGGTGRHDN	Dap-seq OMalley et al.(2016) At1g36060_col_a	0.838	0.940
ERF055 M06578_2.00	Arabidopsis thaliana	NHDYCACCGHCMHH	DDKGDCGGTGRHDN	Dap-seq OMalley et al.(2016) At1g36060_colamp_a	0.838	0.940
AT5G65130 M06686_2.00	Arabidopsis thaliana	YCDYCDCCRCCGCCN	NGGCGGYGGHGRHGR	Dap-seq OMalley et al.(2016) At5g65130_col_a	0.722	0.860
AT5G65130 M06687_2.00	Arabidopsis thaliana	NNNNHNNHDSCRCCGMCMW	WKGKCGGYGSHDNNDNNNN	Dap-seq OMalley et al.(2016) At5g65130_colamp_a	0.722	0.860
WIN1 M01603_2.00	Arabidopsis thaliana	VCRCCGCNNN	NNNGCGGYGB	PBM Weirauch et al.(2014) pTH7566	0.685	0.660
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
BRADI4G29010.1	AP2	108	159	KLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDQAAYRLRGD

Links
Other AP2 family TFs
Other *Brachypodium distachyon* TFs

449 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
X797_010800	Metarhizium robertsii	X797_010800	I	0.000
CCM_00925	Cordyceps militaris	CCM_00925	I	0.000
UV8b_8229	Ustilaginoidea virens	UV8b_8229	I	0.000
S40285_01325	Stachybotrys chlorohalonata	S40285_01325	I	0.000
MGU_05613	Metarhizium guizhouense	MGU_05613	I	0.000
MBR_04325	Metarhizium brunneum	MBR_04325	I	0.000
MANI_012280	Metarhizium anisopliae	MANI_012280	I	0.000
GGTG_06963	Gaeumannomyces graminis	GGTG_06963	I	0.000
BBA_08203	Beauveria bassiana	BBA_08203	I	0.000
MAC_03890	Metarhizium acridum	MAC_03890	I	0.000
MAJ_05190	Metarhizium majus	MAJ_05190	I	0.000
MAM_05054	Metarhizium album	MAM_05054	I	0.000
HPODL_05201	Ogataea parapolymorpha	HPODL_05201	N	0.000
SAPIO_CDS10703	Scedosporium apiospermum	SAPIO_CDS10703	N	0.000
G210_3215	Candida maltosa	G210_3215	N	0.000
FVEG_02340	Fusarium verticillioides	FVEG_02340	N	0.000
FFUJ_05839	Fusarium fujikuroi	FFUJ_05839	N	0.000
Cob_10954	Colletotrichum orbiculare	Cob_10954	N	0.000
CGGC5_9554	Colletotrichum gloeosporioides	CGGC5_9554	N	0.000
CD36_52210	Candida dubliniensis	CD36_52210	N	0.000
CaO19.11726	Candida albicans	CaO19.11726	N	0.000