POPTR_0004s19820 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0004s19820 T004634_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.723 0.820
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.723 0.820
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.723 0.820
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.723 0.820
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.722 0.840
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.722 0.840
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.710 0.780
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.710 0.780
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.710 0.780
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.709 0.720
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.709 0.720
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.709 0.720
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.709 0.720
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.709 0.720
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.709 0.720
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.686 0.740
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.686 0.740
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.681 0.680
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s19820.1 AP2 59 110

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCU07675 Neurospora crassa NCU07675 D 0.000
MBM_06665 Marssonina brunnea MBM_06665 I 0.000
estExt_Genewise1Plus.C_31316 Neurospora discreta estExt_Genewise1Plus.C_31316 I 0.000
e_gw1.7.93.1 Mycosphaerella fijiensis e_gw1.7.93.1 I 0.000
e_gw1.5.1618.1 Mycosphaerella graminicola e_gw1.5.1618.1 I 0.000
TRIVIDRAFT_221632 Trichoderma virens TRIVIDRAFT_221632 I 0.000
SMAC_00876 Sordaria macrospora SMAC_00876 I 0.000
SEPMUDRAFT_148959 Sphaerulina musiva SEPMUDRAFT_148959 I 0.000
PV09_03219 Verruconis gallopava PV09_03219 I 0.000
PFICI_04665 Pestalotiopsis fici PFICI_04665 I 0.000
NEUTE1DRAFT_60106 Neurospora tetrasperma NEUTE1DRAFT_60106 I 0.000
MYCTH_2298970 Myceliophthora thermophila MYCTH_2298970 I 0.000
Mycgr3G41440 Zymoseptoria tritici Mycgr3G41440 I 0.000
MYCFIDRAFT_34745 Pseudocercospora fijiensis MYCFIDRAFT_34745 I 0.000
MPH_12582 Macrophomina phaseolina MPH_12582 I 0.000
MGG_12339 Magnaporthe oryzae MGG_12339 I 0.000
MAPG_00999 Magnaporthe poae MAPG_00999 I 0.000
H105_02995 Trichophyton soudanense H105_02995 I 0.000
H102_02976 Trichophyton rubrum H102_02976 I 0.000
GLRG_02919 Colletotrichum graminicola GLRG_02919 I 0.000
GGTG_02836 Gaeumannomyces graminis GGTG_02836 I 0.000
DOTSEDRAFT_161080 Dothistroma septosporum DOTSEDRAFT_161080 I 0.000
CHGG_04697 Chaetomium globosum CHGG_04697 I 0.000
CFIO01_12540 Colletotrichum fioriniae CFIO01_12540 I 0.000
Bcin07g06260 Botrytis cinerea Bcin07g06260 I 0.000
BAUCODRAFT_37166 Baudoinia compniacensis BAUCODRAFT_37166 I 0.000
A1O3_07261 Capronia epimyces A1O3_07261 N 0.000
H072_1109 Dactylellina haptotyla H072_1109 N 0.000
CSUB01_03432 Colletotrichum sublineola CSUB01_03432 N 0.000
Cob_10631 Colletotrichum orbiculare Cob_10631 N 0.000
CGGC5_3069 Colletotrichum gloeosporioides CGGC5_3069 N 0.000